Job Description P30855 Confidence 83.19% Date Thu Jan 5 11:46:34 GMT 2012 Rank 423 Aligned Residues 185 % Identity 16% Template c3o9pA_ PDB info PDB header:peptide binding protein/peptide Chain: A: PDB Molecule:periplasmic murein peptide-binding protein; PDBTitle: the structure of the escherichia coli murein tripeptide binding2 protein mppa Resolution 2.07 Å

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		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F
Query Conservation
Alig confidence																																																																.	.
Template Conservation																																																																.	.
Template Sequence		V	N	E	K	L	V	V	V	P	N	T	H	Y	W	D	N	A	K	T	V	L	Q	K	V	T	F	L	P	I	N	Q	E	S	A	A	T	K	R	Y	L	A	G	D	I	D	I	T	E	S	F	P	K	N	M	Y	Q	K	L	L	K	D	I	.	.	P	G	Q	V	Y	T	P	P	Q	L	G	T	Y	Y	Y	A
Template Known Secondary structure		T	T	T								T	T	S	T	T	G	G	G				S																				T	S		S	B		S				G	G	G								S	.	.	T	T	S
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		243	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																				.	.	.	.	.	.	.	.	300
Predicted Secondary structure							.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	T	R	K	.	.	.	E	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	V	R	Y	E	V	S	Q	N	W	L	D	T	G	N	L	A	F	L	N	K	P	L	E	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	E	K	Q	W	I	K	Q
Query Conservation							.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.														.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.
Template Sequence		F	N	T	Q	K	G	P	T	A	D	Q	R	V	R	L	A	L	S	M	T	I	.	.	.	.	.	.	D	R	R	L	M	T	E	K	V	L	G	T	G	E	K	P	A	W	H	F	T	P	D	V	T	A	G	F	T	P	E	P	S	P	F	E	Q	M	S	Q	E	E	L	N	A	Q	A	K	T	L	L	S	A
Template Known Secondary structure				T	T	S	S	G	G	G	S											S	.	.	.	.	.	.									T	T		S	S					S	S	S	S		T	T	S	T	T											S
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.							.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		301	.								.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.
Query Sequence		H	P	.	.	.	.	.	.	.	N	L	K	V	L	E	N	P	Y	S	P	P	Y	S	M	T	D	E	N	G	S	V	R	G	V	M	G	D	I	L	N	I	I	T	L	Q	T	G	L	N	F	S	P	I	T	V	S	H	N	I	H	A	G	T	Q	L	S	P	G	G	W	D	I	I
Query Conservation				.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.																															.
Template Conservation																		.	.	.	.	.	.	.	.	.	.																															.
Template Sequence		A	G	Y	G	P	Q	K	P	L	K	L	T	L	L	Y	N	.	.	.	.	.	.	.	.	.	.	T	S	E	N	H	Q	K	I	A	I	A	V	A	S	M	W	K	K	N	L	G	V	D	V	K	L	Q	N	Q	E	.	W	K	T	Y	I	D	S	R	N	T	G	N	F	D	V	I
Template Known Secondary structure			T		B	T	T	B										.	.	.	.	.	.	.	.	.	.	S																														.								T	T	S	S			S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.																															.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.											.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions