Job Description P30855 Confidence 80.88% Date Thu Jan 5 11:46:34 GMT 2012 Rank 433 Aligned Residues 178 % Identity 10% Template c3n6uA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate Resolution 1.87 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.
Predicted Secondary structure															.																																																												.	.	.
Query SS confidence															.																																																												.	.	.
Query Sequence		I	N	A	D	Y	L	N	L	L	K	R	A	L	.	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	.	.	.	D	S	M	R
Query Conservation															.																																																												.	.	.
Alig confidence															.									.																					.	.																													.	.	.
Template Conservation																								.																					.	.
Template Sequence		A	L	P	L	A	L	A	S	F	A	R	E	F	P	D	V	T	V	N	V	R	D	.	G	M	Y	P	A	V	S	P	Q	L	R	D	G	T	L	D	F	A	L	T	.	.	A	A	H	K	H	D	I	D	T	D	L	E	A	Q	P	L	Y	V	S	D	V	V	I	V	G	Q	R	Q	H	P	M	A	N	A	T
Template Known Secondary structure															T	T								.			T	T	T	T						T	T	S		S					.	.				G	G	G	S		T	T																	T	T		T	T	T	T
Template Predicted Secondary structure																								.																					.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.								.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																											.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.
Query Sequence		P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	.	.	.	.	.	.	.	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V
Query Conservation																											.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		R	L	A	E	L	Q	E	C	R	W	A	F	S	S	A	P	R	G	P	G	A	I	I	R	N	A	F	A	R	Y	G	L	P	E	P	K	L	G	L	V	C	E	S	F	L	A	L	P	G	V	V	A	H	S	D	L	L	T	T	M	P	R	T	L	Y	E	R	N	.	.	.	.	A	F	K	D	Q	L	C	S
Template Known Secondary structure		S	G	G	G	G	T	T	S								T	T	S	T	T										T	T													T	T	T							T	S	S		B										S	S	.	.	.	.	T	T	G	G	G
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	L	Q	D	A	L	P	N	P	T	I	Y	V	L	R	R	H	D	L	P	V	T	P	A	A	A	G	L	I	R	W	I	Q	H	H
Template Known Secondary structure						S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions