Job Description P30855 Confidence 98.73% Date Thu Jan 5 11:46:34 GMT 2012 Rank 244 Aligned Residues 221 % Identity 14% Template c3l6gA_ PDB info PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation Resolution 1.90 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.								.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.
Query Sequence		K	N	L	V	I	A	V	H	K	S	Q	T	A	T	L	L	H	T	D	S	Q	Q	R	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	.	.	.	.	.	.	.	L	V	T	S
Query Conservation																																																																							.	.	.	.	.	.	.
Alig confidence									.	.											.	.	.	.	.	.	.	.	.	.																				.																					.	.	.	.	.	.	.
Template Conservation									.	.											.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		K	K	V	D	L	V	Y	.	.	M	N	W	D	S	E	V	A	S	I	.	.	.	.	.	.	.	.	.	.	N	V	L	T	Q	A	M	K	E	H	G	F	D	V	K	T	T	A	L	.	D	N	A	V	A	W	Q	T	V	A	N	G	Q	A	D	G	M	V	S	A	W	L	P	N	T	H	K	T	Q	W	Q
Template Known Secondary structure									.	.		S									.	.	.	.	.	.	.	.	.	.										T	T									.											T	T	S	S	S								T	T	T	T
Template Predicted Secondary structure									.	.											.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		321	.	.	.	.	.	.			.	.	330	.	.	.	.	.	.	.											.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.	.	.				.
Predicted Secondary structure																																				.	.	.	.																				.	.	.	.	.	.														.	.	.
Query SS confidence																																				.	.	.	.																				.	.	.	.	.	.														.	.	.
Query Sequence		P	P	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	M	R	P	L	T	S	P	.	.	.	.	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	.	.	.	.	.	.	S	F	P	K	A	T	I	I	S	F	T	N	L	.	.	.	Y
Query Conservation																																				.	.	.	.																				.	.	.	.	.	.														.	.	.
Alig confidence																																				.	.	.	.																				.	.	.	.	.	.														.	.	.
Template Conservation
Template Sequence		K	Y	G	K	S	V	D	L	L	G	P	N	L	K	G	A	K	V	G	F	V	V	P	S	Y	M	N	V	N	S	I	E	D	L	T	N	Q	A	N	K	T	I	T	G	I	E	P	G	A	G	V	M	A	A	S	E	K	T	L	N	S	Y	D	N	L	K	D	W	K	L	V	P	S	S	S	G	A	M	T	V
Template Known Secondary structure				G	G	G																			T	T	S				B	G	G	G		S	S	G	G	G	G							T	T												T	T		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	.	.	.	.	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	V	R	Y	E	V
Query Conservation																																																							.	.	.	.
Alig confidence																					.	.																																	.	.	.	.												.	.
Template Conservation																					.	.																																																.	.
Template Sequence		A	L	G	E	A	I	K	Q	H	K	D	I	V	I	T	G	W	S	P	.	.	H	W	M	F	N	K	Y	D	L	K	Y	L	A	D	P	K	G	T	M	G	T	S	E	N	I	N	T	I	V	R	K	G	L	K	K	E	N	P	E	A	Y	K	V	L	D	K	F	.	.	N	W	T	T	K	D	M	E	A	V
Template Known Secondary structure									T	T										S	.	.		T					S						B		T	T		T	T												T	T																.	.
Template Predicted Secondary structure																					.	.																																																.	.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.			.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.			.	.	.	.	.	.	540	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	N	W	L	D	T	G	N	L	A	F	L	N	K	P	L	E	L	T	E	H	E	K	Q	W	I	K	Q	H	P
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.
Template Sequence		M	L	D	I	Q	N	G	K	T	P	E	.	.	.	.	.	.	.	.	.	E	A	A	K	N	W	I	K	D	H	Q
Template Known Secondary structure							T	T					.	.	.	.	.	.	.	.	.										T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Template SS confidence
		544	.	.	.	.	.	550	.	.	.	.										.	.	.	.	.	560	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions