Job Description P30855 Confidence 98.90% Date Thu Jan 5 11:46:34 GMT 2012 Rank 227 Aligned Residues 197 % Identity 8% Template c3ix1A_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

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		54	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		S	K	K	N	L	V	I	A	V	.	.	.	H	K	S	Q	T	A	T	L	L	H	T	D	S	Q	Q	R	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P
Query Conservation											.	.	.
Alig confidence											.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	E	T	V	E	V	M	L	D	W	Y	P	N	A	V	H	T	F	L	Y	V	A	I	E	N	G	Y	F	.	.	.	.	.	.	.	.	.	.	.	.	A	E	E	G	L	D	V	D	I	V	F	P	T	N	P	T	D	P	I	Q	L	T	A	S	G	A	I	P	L	A	L	S	Y	Q	P	D	V	I	L
Template Known Secondary structure											S	S	S			G	G	G									T	T			.	.	.	.	.	.	.	.	.	.	.	.			T	T									S	S	T	T									T	S		S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.													.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
						131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure		.	.	.	.																																																					.	.	.	.	.
Query SS confidence		.	.	.	.																																																					.	.	.	.	.
Query Sequence		.	.	.	.	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	M	R	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	.	.	.	.	.	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V
Query Conservation		.	.	.	.																																																					.	.	.	.	.
Alig confidence		.	.	.	.																																																					.	.	.	.	.
Template Conservation
Template Sequence		A	R	S	K	D	L	P	V	V	S	V	A	S	V	V	R	S	P	L	N	H	V	M	F	L	A	E	Q	D	F	D	S	P	A	D	L	V	G	L	T	V	G	Y	P	G	I	P	V	N	E	P	I	L	K	T	M	V	E	A	A	G	G	D	Y	E	Q	V	H	L	M	D	V	G	F	E	L	G	A	S	I
Template Known Secondary structure					T	T												S									G	G	G			S	S	G	G	G	G	T	T	S						S		T	T												T	T			G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																											.	.	.							.	.	.	.
Query SS confidence																																											.	.	.							.	.	.	.
Query Sequence		S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	.	.	.	F	L	T	R	K	E	.	.	.	.	S	V	I	L	N	E	V	L	N	R	F	V	D	A
Query Conservation																																											.	.	.							.	.	.	.
Alig confidence																																											.	.	.							.	.	.	.
Template Conservation
Template Sequence		V	S	G	R	A	D	A	V	V	G	T	Y	I	N	H	E	Y	P	V	L	K	H	E	G	H	D	I	S	Y	F	N	P	V	D	Y	G	V	P	E	Y	D	E	L	V	L	I	S	N	E	A	Y	V	E	E	S	G	E	V	L	A	A	F	W	R	A	A	L	K
Template Known Secondary structure				S	S	S	S							T	T	T								T	T								G	G	G	T	T						S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions