 |
Job Description | P30855 | Confidence | 99.88% | Date | Thu Jan 5 11:46:34 GMT 2012 |
Rank | 88 | Aligned Residues | 124 |
% Identity | 27% | Template | c3hv2B_ |
PDB info |
PDB header:signaling protein | Chain: B: PDB Molecule:response regulator/hd domain protein; |
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
|
Resolution | 1.50 Å |
|
 |
  |   |
957 | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | . | . | . | . | 980 | . | . | . | . | . | . | . | . | . | 990 | . | . | . | . | . | . | . | . | . | 1000 | . | . | . | . | . | . | . | . | . | 1010 | . | . | . | . | . | . | . | . | . | 1020 | . | . | . | . | . | . | . | . | . | 1030 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | K | L | S | I | L | I | A | D | D | H | P | T | N | R | L | L | L | K | R | Q | L | N | L | L | G | Y | D | V | D | E | A | T | D | G | V | Q | A | L | H | K | V | S | M | Q | H | Y | D | L | L | I | T | D | V | N | M | P | N | M | D | G | F | E | L | T | R | K | L | R | E | Q | N | S | S | L | P | I | W | G | L |
Query Conservation |   |
  |   |   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |
|
|   |
|   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |
|
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|
Template Sequence |   |
R | R | P | E | I | L | L | V | D | S | Q | E | V | I | L | Q | R | L | Q | Q | L | L | S | P | L | P | Y | T | L | H | F | A | R | D | A | T | Q | A | L | Q | L | L | A | S | R | E | V | D | L | V | I | S | A | A | H | L | P | Q | M | D | G | P | T | L | L | A | R | I | H | Q | Q | Y | P | S | T | T | R | I | L | L |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  | T | T | S |
|
| S |  |  |  |  |
| S |
|
| S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |
  |
  |   |
1037 | . | . | 1040 | . | . | . | . | . | . | . | . | . | 1050 | . | . | |
. | . | . | . | . | . | . | 1060 | . | . | . | . | . | . | . | . | . | 1070 | . | . | . | . | . | . | . | . | . | 1080 |
Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | A | N | A | Q | A | N | E | R | E | K | G | L | S | C | G | . |
M | N | L | C | L | F | K | P | L | T | L | D | V | L | K | T | H | L | S | Q | L | H | Q | V | A | H | I | A |
Query Conservation |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
| . |   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |
|
Template Sequence |   |
T | G | D | P | D | L | K | L | I | A | K | A | I | N | E | G | E | I | Y | R | Y | L | S | K | P | W | D | D | Q | E | L | L | L | A | L | R | Q | A | L | E | H | Q | H | S | E |
Template Known Secondary structure |   |
 | S |
|
|
|  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|