Return to main results Retrieve Phyre Job Id

Job DescriptionP30855
Confidence98.07%DateThu Jan 5 11:46:34 GMT 2012
Rank287Aligned Residues200
% Identity12%Templatec3gyyC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:periplasmic substrate binding protein; PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   70.........80....... ..90.........100..... ....110.........120.........130......... 140.....
Predicted Secondary structure 





.




.
















.




.
Query SS confidence 

















.

















.

































.





.
Query Sequence  LLHTDSQQRVRGINADYL. NLLKRALNIKLTLREYAD. HQKAMDALAEGEVDIVLSHLVTSPPLNNDIAATK. PLIITF.
Query Conservation 
      
   

  


.  

  

   
      .
   
  
  





      
  
     

 .

    .
Alig confidence 

















.

















.

































.





.
Template Conservation   
   
           

  
 
 
 
 
 
   
 

 
   

  
 

             
   
  


     
Template Sequence  YAHEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELSDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPYLMPTD
Template Known Secondary structure 
SS
TTSSS

TT


TTTTS
S
GGG
TTTSGGGGGGGSTTSS
SS
Template Predicted Secondary structure 





























Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   146...150.........160.........170.........180.........190
Predicted Secondary structure  ...................................

















Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .












































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PALVTTLHDSMRPLTSPKPVNIARVANYPPDEVIHQSFPKATIIS
Query Conservation  ...................................  
  
       
  
 
 



  
      
    
   

 
Alig confidence  ...................................





































..




Template Conservation                           

  
              

 
  



 


             

..
 

 
Template Sequence  MDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVTADEPITSPEDFDNKKIRTMTNPLLAETYKAFG. . ATPTP
Template Known Secondary structure 
TTTTSS


SGGGSTT


S
TT..


Template Predicted Secondary structure 




















..




Template SS confidence 















































































   87..90.........100.........110.........120.........130.........140.........150......... 160....
 
   191........200.........210.........220.........230.........240........ .250.........260.........
Predicted Secondary structure 






















.


Query SS confidence 

























































.




















Query Sequence  FTNLYQALASVSAGHNDYFIGSNIITSSMISRYFTHSLNVVKYYNSPRQYNFFLTRKE. SVILNEVLNRFVDALTNEVRY
Query Conservation    
   

 

  
  

 
         
       
 
            


   .   
   

 

  
      
Alig confidence 




.






















...

























.




















Template Conservation 
   
.
  


 
 


           ... 
 
   
 
            

   
  
  
 
  
  
      
Template Sequence  LPWGE. VYGGLQTGIIDGQENPIFWIESG. . . GLYEVSPNLTFTSHGWFTTAMMANQDFYEGLSEEDQQLVQDAADAAYD
Template Known Secondary structure 

.TS
ST...TGGGS





S
Template Predicted Secondary structure 

.







...

















Template SS confidence 















































































   165.... 170.........180.........190.. .......200.........210.........220.........230.........240
 
   270.....
Predicted Secondary structure 
Query SS confidence 





Query Sequence  EVSQNW
Query Conservation   
  

Alig confidence 





Template Conservation        
Template Sequence  HTIEHI
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 





   241.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions