Job Description P30855 Confidence 98.34% Date Thu Jan 5 11:46:34 GMT 2012 Rank 275 Aligned Residues 150 % Identity 9% Template c3gdiB_ PDB info PDB header:transcription Chain: B: PDB Molecule:period circadian protein homolog 2; PDBTitle: mammalian clock protein mper2 - crystal struture of a pas2 domain fragment Resolution 2.40 Å

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		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.		.	630	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		R	S	V	R	R	R	K	V	I	Q	G	D	L	E	N	Q	I	S	F	R	K	A	L	S	D	S	L	P	N	P	T	Y	V	V	N	W	Q	G	N	V	I	S	H	N	S	A	F	E	H	Y	F	T	A	D	Y	Y	K	N	A	M	L	P	L	E	N	S	D	S	P	F	.	K	D	V	F	S	N	A	H	E
Query Conservation																																																																								.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	H	S	G	Y	E	A	P	R	I	P	P	E	K	.	.	.	.	.	.	.	.	.	.	.	.	R	I	F	T	T	T	H	T	P	N	C	L	F	Q	A	V	D	E	R	A	V	P	L	L	G	Y	L	P	Q	D	L	I	E	T	P	V	L	V	Q	L	H	P	S	D	R	P	L	M	L	A	I	H	K
Template Known Secondary structure		B				T	T	S	T	T				G	G	G	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S	B						T	T						S							T	T	S	B	T	G	G	G	B		T	T	T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.													.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	A	E	T	K	E	N	R	T	I	Y	T	Q	V	F	E	I	D	N	G	I	E	K	R	C	I	N	H	W	H	T	L	C	N	L	P	A	S	D	N	A	V	Y	I	C	G	W	Q	D	I	T	E	T	R	D	L	I	N	A	L	E	V	E	K	N	K	A	I	K	A	T	V	A	K	S	Q	F	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	L	Q	A	G	G	Q	P	F	D	Y	S	P	I	R	F	R	T	R	N	G	E	Y	I	T	L	D	T	S	W	S	S	F	I	N	P	W	S	R	K	I	S	F	I	I	G	R	H	K	V	R	V	G	P	L	N	E	D	V	F	A	A	P	P	C	P	E	P	S	V	Q	E	L	T	E	Q	I	H	R
Template Known Secondary structure							T	T													T	T	S															T	T	T																	S	S	S		T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		718	.	720
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	M
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		467	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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