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Job DescriptionP30855
Confidence99.96%DateThu Jan 5 11:46:34 GMT 2012
Rank16Aligned Residues223
% Identity14%Templatec3g41A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   54.....60.........70.........80.........90.........100.........110.........120.........130...
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Query Sequence  SKKNLVIAVHKSQTATLLHTDSQQRVRGINADYLNLLKRALNIKLTLREYADHQKAMDALAEGEVDIVLSHLVTSPPLNN
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Template Sequence  RNRIWIVGT. NATYPPFEYVDAQGEVVGFDIDLAKAISEKLGKQLEVREFA. FDALILNLKKHRIDAILAGMSITPSRQK
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S
BTTTB
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.GGGTTSSS
S

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T
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   8.10...... ...20.........30.........40.........50....... ..60.........70.........80.....
 
   134.....140.........150.... .....160.........170.........180.........190.........200.........210..
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Query Sequence  DIAATKPLIITFPALVTTLHD. SMRPLTSPKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGHNDYFIGS
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Template Sequence  EIALLPYYGDEVQELMVVSKRSLETPVLPLTQYSSVAVQTGTYQEHYLLSQPGICVRSFDSTLEVIMEVRYGKSPVAVLE
Template Known Secondary structure  TS


B
TT

S
S

GGGSS
TTSTSTT

S
TTSSS
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   86...90.........100.........110.........120.........130.........140.........150.........160.....
 
   213......220.........230....... ..240.........250.........260...... ...270........
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Query Sequence  NIITSSMISRYFTHSLNVVKYYNSP. RQYNFFLTRKESVILNEVLNRFVDALTNE. VRYEVSQNWLDT
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Template Sequence  PSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLS
Template Known Secondary structure  GGG
TT

GGG
B


TT
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   166...170.........180.........190.........200.........210.........220.........230...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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