Job Description P30855 Confidence 89.57% Date Thu Jan 5 11:46:34 GMT 2012 Rank 397 Aligned Residues 170 % Identity 7% Template c3fd3A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:chromosome replication initiation inhibitor protein; PDBTitle: structure of the c-terminal domains of a lysr family protein from2 agrobacterium tumefaciens str. c58. Resolution 1.70 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.							.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.
Query Sequence		I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	.	.	.	.	.	.	D	S
Query Conservation																																																																										.	.	.	.	.	.
Alig confidence																							.																													.	.	.	.																			.	.	.	.	.	.
Template Conservation																							.																													.	.	.	.
Template Sequence		W	F	L	D	A	V	S	K	F	T	G	G	S	D	Y	L	V	N	I	A	V	.	D	D	Q	D	H	T	V	E	W	L	R	G	G	R	V	L	A	A	V	T	A	H	D	K	P	V	Q	G	.	.	.	.	C	R	V	T	P	L	G	V	L	R	Y	H	A	T	A	S	P	D	F	X	A	R	H	F	A	D
Template Known Secondary structure		T											T	S	S								.			S	S								T	T	S		S					S			S			T	T	.	.	.	.																									T	T
Template Predicted Secondary structure																							.																													.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence		M	R	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	.	.	.	.	.	Y	P	P	D	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.																																															.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.
Template Sequence		G	V	T	P	A	A	L	A	R	A	P	G	L	T	F	N	Q	K	D	R	L	Q	A	S	W	I	R	T	A	L	G	E	D	V	S	Y	P	T	H	W	L	P	S	T	D	G	F	V	K	A	S	L	A	G	X	G	W	G	L	N	P	V	Q	L	V	A	E	H	.	.	.	.	.	.	L	A	A	G	R	L
Template Known Secondary structure			S						T	T	S					S	S	T	T													S	S																					T	T	S		B												.	.	.	.	.	.				T	S	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.							270	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.							250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	.	.	.	.	.	.	V	I	L	N	E	V	L	N	R	F	V	D	A
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	L	X	P	G	T	P	L	D	I	P	L	Y	W	Q	V	N	R	L	A	A	E	R	L	A	G	L	T	A	N	X	V	G	T	A	R	V
Template Known Secondary structure				S	S	T	T													T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions