Job Description P30855 Confidence 97.89% Date Thu Jan 5 11:46:34 GMT 2012 Rank 293 Aligned Residues 137 % Identity 9% Template c3cloC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution Resolution 2.04 Å

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		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.							.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.																										.	.	.	.	.	.
Query SS confidence																																								.																										.	.	.	.	.	.
Query Sequence		Y	L	L	R	S	V	R	R	R	K	V	I	Q	G	D	L	E	N	Q	I	S	F	R	K	A	L	S	D	S	L	P	N	P	T	Y	V	V	N	.	W	Q	G	N	V	I	S	H	N	S	A	F	E	H	Y	F	T	A	D	Y	Y	K	N	A	M	.	.	.	.	.	.	L	P	L	E	N	S	D	S	P	F
Query Conservation																																								.																										.	.	.	.	.	.
Alig confidence																																								.																										.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	A	T	H	P	T	A	H	E	A	L	D	G	I	V	E	Q	H	Q	Q	F	V	R	S	L	T	E	V	N	G	G	C	A	V	I	S	D	L	S	N	R	K	S	Y	V	T	V	H	P	W	A	N	F	L	G	L	T	P	E	E	A	A	L	S	V	I	D	S	X	D	E	D	C	I	Y	R	R	I	H
Template Known Secondary structure					T	S	G	G	G	G	S																					S								T	T	T	T								T	T		G	G	G												T	T				T					T	T	B
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		629	630	.	.	.	.	.	.	.	.	.	640	.	.												.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670		.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		K	D	V	F	S	N	A	H	E	V	T	A	E	T	.	.	.	.	.	.	.	.	.	.	.	K	E	N	R	T	I	Y	T	Q	V	F	E	I	D	N	G	I	E	K	R	C	I	N	H	W	H	T	L	.	C	N	L	P	A	S	D	N	A	V	Y	I	C	G	W	Q	D	I	T	E	T	R
Query Conservation																.	.	.	.	.	.	.	.	.	.	.																													.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation
Template Sequence		P	E	D	L	V	E	K	R	L	X	E	Y	K	F	F	Q	K	T	F	S	X	S	P	G	E	R	L	K	Y	R	G	R	C	R	L	R	X	X	N	E	K	G	V	Y	Q	Y	I	D	N	L	V	Q	I	X	Q	N	T	P	A	G	N	V	W	L	I	F	C	L	Y	S	L	S	A	D	Q	R
Template Known Secondary structure																					T	S						T	T												T	T	S																T	T	S													S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions