Job Description P30855 Confidence 98.78% Date Thu Jan 5 11:46:34 GMT 2012 Rank 240 Aligned Residues 108 % Identity 9% Template c3b33A_ PDB info PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the pas domain of nitrogen regulation protein2 nr(ii) from vibrio parahaemolyticus Resolution 1.83 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	R	K	A	L	S	D	S	L	P	N	P	T	Y	V	V	N	W	Q	G	N	V	I	S	H	N	S	A	F	E	H	Y	F	T	A	D	Y	Y	K	N	A	M	L	P	L	E	N	S	D	S	P	F	K	D	V	F	S	N	A	H	E	V	T	A	E	T	K	E	N	R	T	I	Y	T	Q	V	F	E	I
Query Conservation
Alig confidence																																																																.	.	.
Template Conservation																																																																.	.	.
Template Sequence		S	L	P	S	A	I	L	N	N	X	V	T	A	T	L	I	L	D	D	G	L	A	I	R	Y	A	N	P	A	A	E	L	L	F	S	Q	S	A	K	R	I	V	E	Q	S	L	S	Q	L	I	Q	H	A	S	L	D	L	A	L	L	T	Q	.	.	.	P	L	Q	S	G	Q	S	I	T	D	S	D	V	T	F
Template Known Secondary structure												S	S							T	T		B												T	T	S						T	T		B						S						T						.	.	.
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	G	I	E	K	R	C	I	N	H	W	H	T	L	C	N	L	P	A	S	D	N	A	V	Y	I	C	G	W	Q	D	I
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		V	V	D	G	R	P	L	X	L	E	V	T	V	S	P	I	T	W	Q	R	Q	.	.	L	X	L	L	V	E	X	R	K	I
Template Known Secondary structure				T	T															T	T		.	.
Template Predicted Secondary structure																							.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions