Job Description P30855 Confidence 99.81% Date Thu Jan 5 11:46:34 GMT 2012 Rank 157 Aligned Residues 257 % Identity 16% Template c2zbkB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms Resolution 3.56 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		829	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.			850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.			.	.	.	.	.	.	900		.	.	.
Predicted Secondary structure																							.	.																																													.	.								.
Query SS confidence																							.	.																																													.	.								.
Query Sequence		F	K	Q	V	L	S	N	L	L	S	N	A	L	K	F	T	T	E	G	A	V	.	.	K	I	T	T	S	L	G	H	I	D	D	N	H	A	V	I	K	M	T	I	M	D	S	G	S	G	L	S	Q	E	E	Q	Q	Q	L	F	K	R	Y	S	Q	T	S	A	.	.	G	R	Q	Q	T	G	S	.	G	L	G
Query Conservation																							.	.																																													.	.								.
Alig confidence																							.	.																																													.	.								.
Template Conservation
Template Sequence		L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R	Q	T	R	G	M	Y	G	L	G
Template Known Secondary structure															T	T	T	T	T	T	T														T	T	T	T										S					G	G	G	S					T	S				S						S			S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		904	.	.	.	.	.	910	.	.	.	.	.	.	.		.	.	920	.	.	.	.		.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.				.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.
Predicted Secondary structure																.								.																																.	.	.
Query SS confidence																.								.																																.	.	.
Query Sequence		L	M	I	C	K	E	L	I	K	N	M	Q	G	D	.	L	S	L	E	S	H	P	.	G	I	G	T	T	F	T	I	T	I	P	V	E	I	S	Q	Q	V	A	T	V	E	A	K	A	E	Q	P	I	T	L	.	.	.	P	E	K	L	S	I	L	I	A	D	D	H	P	T	N	R	L	L	L	K	R	Q	L
Query Conservation																.								.																																.	.	.
Alig confidence																.								.																																.	.	.
Template Conservation
Template Sequence		V	K	A	A	V	L	Y	S	Q	M	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I	D	I	N	K	N	E	P	I	I	V	E	R	G	S	V	E	N	T	R	G	F	H	G	T	S	V	A	I	S	I	P	G	D	W	P	K	A	K	S	R	I	Y	E	Y	I
Template Known Secondary structure																								T	T		S											T	T	T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		979	980	.						.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020			.	.	.	.	.	.			.	.	.	1030	.	.	.	.	.	.	.	.					.	1040	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																																								.	.							.	.													.	.	.	.
Query SS confidence					.	.	.	.	.																																								.	.							.	.													.	.	.	.
Query Sequence		N	L	L	.	.	.	.	.	G	Y	D	V	D	E	A	T	D	G	V	Q	A	L	H	K	V	S	M	Q	H	Y	D	L	L	I	T	D	V	N	M	P	N	M	D	G	F	E	L	.	.	T	R	K	L	R	E	.	.	Q	N	S	S	L	P	I	W	G	L	T	A	.	.	.	.	N	A	Q	A	N	E	R
Query Conservation					.	.	.	.	.																																								.	.							.	.													.	.	.	.
Alig confidence					.	.	.	.	.																																								.	.							.	.													.	.	.	.
Template Conservation
Template Sequence		K	R	T	Y	I	I	T	P	Y	A	E	F	I	F	K	D	P	E	G	N	V	T	Y	Y	P	R	L	T	N	K	I	P	K	P	P	Q	E	V	K	P	H	P	Y	G	V	D	R	E	E	I	K	I	L	I	N	N	L	K	R	D	Y	T	I	K	E	F	L	V	N	E	F	Q	S	I	G	D	T	T	A	D
Template Known Secondary structure									T	T								T	T	S																							G	G	G											T	T		S	S			B							T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		1046	.	.	.	1050	.	.	.	.		.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		E	K	G	L	S	C	G	M	N	.	L	C	L	F	K	P	L	T	L	D	V	L	K	T	H	L	S	Q	L	H	Q	V	A	H	I	A	P	Q	Y	R	H
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		K	I	L	E	L	A	G	L	K	P	N	K	K	V	K	N	L	T	E	E	E	I	T	R	L	V	E	T	F	K	K	D	E	D	F	R	S	P	S	A	D
Template Known Secondary structure							T	T			S	S		B	S	S																									S	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions