Job Description P30855 Confidence 99.90% Date Thu Jan 5 11:46:34 GMT 2012 Rank 54 Aligned Residues 221 % Identity 15% Template c2xx7B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 2; PDBTitle: crystal structure of 1-(4-(1-pyrrolidinylcarbonyl)phenyl)-3-2 (trifluoromethyl)-4,5,6,7-tetrahydro-1h-indazole in complex with3 the ligand binding domain of the rat glua2 receptor and glutamate4 at 2.2a resolution. Resolution 2.20 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.													.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	K	N	L	V	I	A	V	H	K	S	Q	T	A	T	L	L	H	T	D	S	Q	.	.	.	.	.	.	.	Q	R	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	D	H	Q	K	A	M	D	A	L	A
Query Conservation																									.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.													.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.
Template Sequence		A	N	K	T	V	V	V	T	T	.	.	I	L	E	S	P	Y	V	M	M	K	K	N	H	E	M	L	E	G	N	E	R	Y	E	G	Y	C	V	D	L	A	A	E	I	A	K	H	C	G	F	K	Y	K	L	T	I	V	G	D	G	K	Y	G	A	R	D	A	D	T	K	I	W	N	G	M	V	G	E	L	V
Template Known Secondary structure											.	.			B	T	T	T	B				T	T		T	T			S	G	G	G			S														T									T	T						B		T	T	T			B
Template Predicted Secondary structure											.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.													.	.	.	.
Predicted Secondary structure																																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	M	R	.	.	.	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	.	.	.	.	.	.	.	.	.	.	.	.	D	E	V	I
Query Conservation																																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	G	K	A	D	I	A	I	A	P	L	T	I	T	L	V	R	E	E	V	I	D	F	S	K	P	F	M	S	L	G	I	S	I	M	I	K	K	G	T	P	I	E	S	A	E	D	L	S	K	Q	T	E	I	A	Y	G	T	L	D	S	G	S	T	K	E	F	F	R	R	S	K	I	A	V	F	D	K	M	W
Template Known Secondary structure		T	T	S		S				S	S		B							T	T					S		S											T	T		S			S						T		S	S	S					B	T	T	S											S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	L	N	E	V	L	N	R	F
Query Conservation
Alig confidence																																																							.																		.
Template Conservation																																																							.																		.
Template Sequence		T	Y	M	R	S	A	E	P	S	V	F	V	R	T	T	A	E	G	V	A	R	V	R	K	S	K	G	K	Y	A	Y	L	L	E	S	T	M	N	E	Y	I	E	Q	R	K	P	C	D	T	M	K	V	G	.	G	N	L	D	S	K	G	Y	G	I	A	T	P	K	G	S	S	.	L	G	N	A	V	N	L	A
Template Known Secondary structure								S	S				B	S	S											T	T	T	S															T	S	T	T							S	.			S											T	T		T	.
Template Predicted Secondary structure																																																							.																		.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.
		260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		V	D	A	L	.	T	N	E	V	R	Y	E	V	S	Q	N	W	L	D	T
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		V	L	K	L	S	E	Q	G	L	L	D	K	L	K	N	K	W	W	Y	D
Template Known Secondary structure								T	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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