Job Description P30855 Confidence 99.05% Date Thu Jan 5 11:46:34 GMT 2012 Rank 215 Aligned Residues 208 % Identity 12% Template c2x26A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli Resolution 1.75 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																								.																														.
Query SS confidence																																								.																														.
Query Sequence		K	N	L	V	I	A	V	H	K	S	Q	T	A	T	L	L	H	T	D	S	Q	Q	R	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	.	L	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	.	S	H	L	V	T	S	P	P	L	N	N
Query Conservation																																								.																														.
Alig confidence								.																		.	.	.	.	.	.	.	.	.	.	.				.																														.
Template Conservation								.																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	L	R	I	G	.	Y	Q	K	G	S	I	G	M	V	L	A	K	S	H	Q	L	L	.	.	.	.	.	.	.	.	.	.	.	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D	I	P	P	I	F	A	Q	A	A
Template Known Secondary structure		S						.			T	T										T	T			.	.	.	.	.	.	.	.	.	.	.					T	T	S								S	S											T	S		S						S									T
Template Predicted Secondary structure								.																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.												50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		134	.					.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure				.	.	.	.																																																.	.	.	.	.	.
Query SS confidence				.	.	.	.																																																.	.	.	.	.	.
Query Sequence		D	I	.	.	.	.	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	M	R	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	.	.	.	.	.	.	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A
Query Conservation				.	.	.	.																																																.	.	.	.	.	.
Alig confidence				.	.	.	.																																																.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T	P	A	D	A	R	A	A	F	Q	Q
Template Known Secondary structure		T													G	G	G							T	T		S			S	G	G	G	G	T	T	S						T	T	S													T	T			G	G	G	S																T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.									250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.															.	.
Query SS confidence																																																.	.	.	.	.	.	.	.															.	.
Query Sequence		G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	.	.	.	.	.	.	.	.	V	I	L	N	E	V	L	N	R	F	V	D	A	L	.	.	T	N	E	V	R	Y	E	V	S	Q
Query Conservation																																																.	.	.	.	.	.	.	.															.	.
Alig confidence																							.	.																								.	.	.	.	.	.	.	.															.	.
Template Conservation																							.	.
Template Sequence		G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	.	.	V	R	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q	R	E	Q	S	I	A	L	L	A
Template Known Secondary structure		T	S	S	S						T	T									S	S	.	.							S	T	T	S																	T																					T
Template Predicted Secondary structure																							.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		274	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	W	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	M	G
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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