Job Description P30855 Confidence 99.96% Date Thu Jan 5 11:46:34 GMT 2012 Rank 29 Aligned Residues 217 % Identity 18% Template c2v25B_ PDB info PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate Resolution 1.49 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																										.																				.	.	.
Query SS confidence																										.																				.	.	.
Query Sequence		L	A	S	K	K	N	L	V	I	A	V	H	K	S	Q	T	A	T	L	L	H	T	D	S	.	Q	Q	R	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	L	.	.	.	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T
Query Conservation																										.																				.	.	.
Alig confidence													.													.																				.	.	.											.
Template Conservation													.																																														.
Template Sequence		I	K	S	K	G	Q	L	I	V	G	V	.	K	N	D	V	P	H	Y	A	L	L	D	Q	A	T	G	E	I	K	G	F	E	V	D	V	A	K	L	L	A	K	S	I	L	G	D	D	K	K	I	K	L	V	A	V	N	.	A	K	T	R	G	P	L	L	D	N	G	S	V	D	A	V	I	A	T	F	T	I
Template Known Secondary structure						T							.		S			T	T	T					T	T	T	T				S															S		T	T	S								.	T	T	T							T	T	S		S				S	S		B
Template Predicted Secondary structure													.																																														.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		S	P	P	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	M	R	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	.	.	.	.	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A
Query Conservation																																																							.	.	.	.
Alig confidence																																																							.	.	.	.
Template Conservation
Template Sequence		T	P	E	R	K	R	I	Y	N	F	S	E	P	Y	Y	Q	D	A	I	G	L	L	V	L	K	E	K	K	Y	K	S	L	A	D	M	K	G	A	N	I	G	V	A	Q	A	A	T	T	K	K	A	I	G	E	A	A	K	K	I	G	I	D	V	K	F	S	E	F	P	D	Y	P	S	I	K	A	A	L	D	A
Template Known Secondary structure							T	T					S		S											G	G	G				S	G	G	G	G	T	T							T	T		S													T									S	S										T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	V	R	Y	E	V	S	Q	N	W	L
Query Conservation
Alig confidence																							.	.	.	.	.																																			.
Template Conservation																							.	.	.	.	.																																			.
Template Sequence		K	R	V	D	A	F	S	V	D	K	S	I	L	L	G	Y	V	D	D	K	S	.	.	.	.	.	E	I	L	P	D	S	F	E	P	Q	S	Y	G	I	V	T	K	K	D	D	P	A	F	A	K	Y	V	D	D	F	V	K	E	H	.	K	N	E	I	D	A	L	A	K	K	W	G
Template Known Secondary structure		T	S	S	S										T	T	T			T	T		.	.	.	.	.				S				S										T	T															T	.											T	T
Template Predicted Secondary structure																							.	.	.	.	.																																			.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions