Job Description P30855 Confidence 97.86% Date Thu Jan 5 11:46:34 GMT 2012 Rank 295 Aligned Residues 221 % Identity 14% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.									.	.	.	.	.	140
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.
Query Sequence		T	L	L	H	T	D	S	Q	Q	R	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	.	.	.	.	.	.	.	.	I	A	A	T	K	P
Query Conservation																																																																				.	.	.	.	.	.	.	.
Alig confidence																																				.																																.	.	.	.	.	.	.	.
Template Conservation																																				.
Template Sequence		T	V	R	F	S	D	V	G	W	T	D	I	T	A	T	T	A	T	A	T	T	I	L	E	A	L	G	Y	E	T	D	V	K	V	.	L	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P	Y	R	E	D	K	S	V	E	T	V	R	E	N
Template Known Secondary structure									S		T	T															T	T								.							T	S	S	T	T	T	T											S	T	T										T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.								.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.								.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200
Predicted Secondary structure																.	.	.									.	.	.	.	.	.	.																					.	.	.	.	.	.	.														.	.	.
Query SS confidence																.	.	.									.	.	.	.	.	.	.																					.	.	.	.	.	.	.														.	.	.
Query Sequence		L	I	I	T	F	P	A	L	V	T	T	L	H	D	.	.	.	S	M	R	P	L	T	S	P	.	.	.	.	.	.	.	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	.	.	.	.	.	.	.	F	P	K	A	T	I	I	S	F	T	N	L	Y	.	.	.	Q	A	L	A	S
Query Conservation																.	.	.									.	.	.	.	.	.	.																					.	.	.	.	.	.	.														.	.	.
Alig confidence																.	.	.									.	.	.	.	.	.	.																					.	.	.	.	.	.	.														.	.	.
Template Conservation
Template Sequence		L	A	G	A	K	Y	T	L	A	T	N	A	K	G	A	E	L	G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E	S	S	E	Q	G	M	L	A	Q	V	A	R	A
Template Known Secondary structure																			T			B	T	T	S	S	G	G	G		T	T	T		S							S	S											T	T	T	T		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																														.	.	.																					.	.	.	.
Query SS confidence																														.	.	.																					.	.	.	.
Query Sequence		V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	.	.	.	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	.	.	.	.	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	V	R	Y	E	V	S	Q
Query Conservation																														.	.	.																					.	.	.	.
Alig confidence																.	.													.	.	.																					.	.	.	.												.	.
Template Conservation																.	.																																																			.	.
Template Sequence		E	K	S	G	D	P	I	V	F	L	G	W	E	P	.	.	H	P	M	N	A	N	F	K	L	T	Y	L	S	G	G	D	D	V	F	G	P	N	Y	G	G	A	T	V	H	T	N	V	R	A	G	Y	T	T	E	C	P	N	V	D	K	L	L	Q	N	L	.	.	S	F	S	L	Q	M	E	N	E	I	M	G
Template Known Secondary structure		T	T	T	T										S	.	.	S	G	G	G	G	T	S						B	S			S	S	S		S	T	T	T										T	T					S								T	T		.	.												T
Template Predicted Secondary structure																.	.																																																			.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	W	L	D	T	G	N	L	A	F	L	N	K	P	L	E	L	T	E	H	E	K	Q	W	I	K	Q	H	P
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.
Template Sequence		K	I	L	N	.	.	.	.	.	.	.	.	D	G	E	D	P	E	K	A	A	A	A	W	L	K	D	N	P
Template Known Secondary structure		T	T	S	S	.	.	.	.	.	.	.	.	S				T	T					T	T	S	S	S	S	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.
Template SS confidence
		270	.	.	.									.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions