Job Description P30855 Confidence 99.94% Date Thu Jan 5 11:46:34 GMT 2012 Rank 40 Aligned Residues 211 % Identity 13% Template c2rc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution Resolution 1.96 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.											.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	T	A	T	L	L	H	T	D	S	Q	Q	R	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	.	.	.	.	.	.	.	.	.	.	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D
Query Conservation																																											.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	S	S	N	D	T	V	P	I	K	F	K	K	C	C	Y	G	Y	C	I	D	L	L	E	Q	L	A	E	D	M	N	F	D	F	D	L	Y	I	V	G	D	G	K	Y	G	A	W	K	N	G	H	W	T	G	L	V	G	D	L	L	S	G	T	A	N	M	A	V	T	S	F	S	I	N	T	A	R	S	Q	V
Template Known Secondary structure		T	S	S	S					G	G	G						S														T									T	T								T	T												T	S		S				S	S		B							T	T
Template Predicted Secondary structure
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.																																.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.																																.	.	.	.
Query Sequence		I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	.	.	.	.	.	.	.	M	R	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	F	P	K	A	.	.	.	.	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A
Query Conservation																							.	.	.	.	.	.	.																																.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																																.	.	.	.
Template Conservation
Template Sequence		I	D	F	T	S	P	F	F	S	T	S	L	G	I	L	V	R	T	R	G	T	E	L	S	G	I	H	D	P	K	L	H	H	P	S	Q	G	F	R	F	G	T	V	R	E	S	S	A	E	D	Y	V	R	Q	S	F	P	E	M	H	E	Y	M	R	R	Y	N	V	P	A	T	P	D	G	V	Q	Y	L	K	N
Template Known Secondary structure		S				S		S											T	T	S					S	T	T						S			T	T						B	T	T	S																		G	G	G		B	S	S										S
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		204	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure					.	.																																																													.
Query SS confidence					.	.																																																													.
Query Sequence		G	H	N	.	.	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	.	V	R	Y	E	V	S	Q	N	W	L	D
Query Conservation					.	.																																																													.
Alig confidence					.	.																											.																		.																.
Template Conservation																																	.																		.
Template Sequence		D	P	E	K	L	D	A	F	I	M	D	K	A	L	L	D	Y	E	V	S	I	D	A	D	C	K	L	L	T	V	G	.	K	P	F	A	I	E	G	Y	G	I	G	L	P	P	N	S	P	.	L	T	S	N	I	S	E	L	I	S	Q	Y	K	S	H	G	F	M	D	V	L	H	D	K	W	Y	K
Template Known Secondary structure		S	S				S																	S	S							S	.														T	T		T	.	T														T	T										T	T
Template Predicted Secondary structure																																	.																		.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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