Job Description P30855 Confidence 71.06% Date Thu Jan 5 11:46:34 GMT 2012 Rank 465 Aligned Residues 201 % Identity 15% Template c2qryD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein Resolution 2.25 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	.	.	.	.	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	G	P	V	V	K	K	A	F	E	A	D	C	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	X	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L	F	A	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N
Template Known Secondary structure		S	S											S	S		S								S													G	G	G				S							G	G	G						T	T	T		B							T	T	S				T	T
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
				138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.																		.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure		.	.																	.	.	.										.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																	.	.	.										.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	.	.	.	D	S	M	R	P	L	T	S	P	.	.	.	.	.	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	I	H	Q	S	F	P	K	A	T	I	I	S
Query Conservation		.	.																	.	.	.										.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																	.	.	.										.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																																																													.
Template Sequence		D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	X	Q	K	V	Y	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	.	T	V	T	V
Template Known Secondary structure		S	S															T	T	T		S	S			S	S								S	S									T	T	T																G	G	G										T	T	.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	V	R	Y	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	X	V	S	P	A	F	Q	N
Template Known Secondary structure			S	S										T	T	S		S						T	T																				T	T												B	T	T		S													T	S					T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	Q	N	W	L	D	T	G	N	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	P	T	G	N	W	X	Y	P	V	A
Template Known Secondary structure		T					T		S			S	S
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions