Job Description P30855 Confidence 96.36% Date Thu Jan 5 11:46:34 GMT 2012 Rank 346 Aligned Residues 157 % Identity 9% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.							.	.			.	.	.	.	.	170		.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.			.	.							.							.	.	.	.
Query SS confidence																								.	.	.	.	.	.			.	.							.							.	.	.	.
Query Sequence		L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	M	R	P	L	T	S	P	.	.	.	.	.	.	K	P	.	.	V	N	I	A	R	V	.	A	N	Y	P	P	D	.	.	.	.	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D
Query Conservation																								.	.	.	.	.	.			.	.							.							.	.	.	.
Alig confidence																								.	.	.	.	.	.			.	.							.							.	.	.	.
Template Conservation
Template Sequence		V	A	Y	V	P	S	V	F	V	V	P	A	G	S	K	Y	K	T	L	G	E	L	M	A	A	A	K	Q	T	N	T	Q	V	T	Y	G	S	C	G	N	G	T	P	Q	H	L	A	G	E	L	L	N	V	S	A	K	T	H	M	V	H	V	P	Y	K	G	C	G	P	A	L	N	D	V	L	G	S	Q	I	G
Template Known Secondary structure													T	T		S			S								T		S	S	S								S	S	T	T	S														T									S	S										T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.															.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.															.	.
Query Sequence		Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	.	.	V	I	L	N	E	V	L	N	R	F	V	D	A	L	.	.	T	N	E
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.															.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.															.	.
Template Conservation
Template Sequence		L	A	V	V	T	A	S	S	A	I	P	F	I	K	A	G	K	L	Q	A	L	A	V	T	S	K	E	R	S	A	L	L	P	E	V	P	T	V	A	E	Q	G	V	A	G	Y	E	L	N	Q	W	H	G	L	L	V	P	G	A	T	P	M	A	V	R	Q	K	L	Y	D	G	I	A	K	V	M	Q	R	D	D
Template Known Secondary structure																T	T	S							S	S	S	S			T	T		T	T	S		B	S	G	G	G	T		T	T													T	T	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	Y	E	V	S	Q	N	W	L	D	T	G	N	L	A	F	L	N	K	P	L	E	L	T	E	H	E	K	Q	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	K	K	L	A	D	L	G	Y	S	T	A	S	D	G	P	E	V	F	Q	K	M	V	E	T	D	I	D	R	F
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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