Job Description P30855 Confidence 98.16% Date Thu Jan 5 11:46:34 GMT 2012 Rank 282 Aligned Residues 181 % Identity 10% Template c2pfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Resolution 1.80 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.																																			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.																																			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	.	.	.	.	.	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	A	T	K	.	P	L	I	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.																																			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.																																			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	V	K	D	V	D	S	L	S	G	G	K	L	K	I	T	L	H	N	N	A	S	L	Y	K	A	P	E	I	K	R	A	V	Q	G	N	Q	A	Q	I	G	E	I	L	L	T	N	F	A	N	E	D	P	V	Y	E	L	D	G	L	P	F	L	A	T	G	Y	D	A	S	F	K	L	Y	Q	A	Q	K	P
Template Known Secondary structure												T	T	S								T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		G	G	G	T	G	G	G	S	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
																						145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	A	L	V	T	T	L	H	D	S	M	R	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.																		.																													.	.	.
Template Conservation																													.	.																		.																													.	.	.
Template Sequence		F	L	E	K	K	L	A	S	Q	G	M	M	L	L	Y	S	V	A	W	P	P	Q	G	I	F	A	N	.	.	R	D	I	K	Q	V	S	D	M	K	G	L	K	W	R	A	Y	.	S	P	V	T	A	K	I	A	E	L	V	G	A	Q	P	V	T	V	Q	Q	A	E	L	A	Q	A	M	A	.	.	.	T	G
Template Known Secondary structure									T	T	T																	S	.	.	S			S	S	G	G	G	G	T	T						S	.	S											T								G	G	G							.	.	.	T	T
Template Predicted Secondary structure																													.	.																		.																													.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.				.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	.	.	.	.	.	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	V	R	Y	E	V	S	Q	N
Query Conservation																																														.	.	.	.	.
Alig confidence																	.	.	.																											.	.	.	.	.
Template Conservation																	.	.	.
Template Sequence		V	I	D	S	Y	M	S	S	G	S	T	G	F	D	T	.	.	.	K	T	Y	E	Y	I	K	K	F	Y	D	T	E	A	W	L	P	K	N	A	V	L	V	N	K	K	A	F	D	A	L	D	P	A	T	Q	Q	A	L	K	K	A	G	A	Q	A	E	E	R	G	W	K	L	S	Q	E	K
Template Known Secondary structure		S		S												T	.	.	.	T	G	G	G	T																									T	S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions