Job Description P30855 Confidence 98.67% Date Thu Jan 5 11:46:34 GMT 2012 Rank 249 Aligned Residues 128 % Identity 9% Template c2pdtD_ PDB info PDB header:circadian clock protein Chain: D: PDB Molecule:vivid pas protein vvd; PDBTitle: 2.3 angstrom structure of phosphodiesterase treated vivid Resolution 2.20 Å

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		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		G	F	Y	L	L	R	S	V	R	R	R	K	V	I	Q	G	D	L	E	N	Q	I	S	F	R	K	A	L	S	D	S	L	P	N	P	T	Y	V	V	N	W	Q	G	N	V	I	S	H	N	S	A	F	E	H	Y	F	T	A	D	Y	Y	K	N	A	M	L	P	L	E	N	S	D	S	P	F	K	D	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																			.	.	.	.	.	.																																							.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		I	M	G	Y	L	I	Q	I	M	N	R	P	N	P	Q	V	E	L	G	P	V	D	T	S	C	A	L	I	L	C	D	L	K	.	.	.	.	.	.	Q	K	D	T	P	I	V	Y	A	S	E	A	F	L	Y	M	T	G	Y	S	N	A	E	V	L	G	R	N	C	R	F	L	Q	S	P	D	G	M	V	K	P
Template Known Secondary structure													S				S				S			T	T	S	S						T	T	.	.	.	.	.	.	S	T	T																		S	T	T	T	T	T	S		G	G	G	G	G	S	T	T	S				T
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.							80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
									631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	V	F	S	N	A	H	E	V	T	A	E	T	K	E	N	R	T	I	Y	T	Q	V	F	E	I	D	N	G	I	E	K	R	C	I	N	H	W	H	T	L	C	N	L	P	A	S	D	N	A	V	Y	I	C	G	W	Q	D
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	T	R	K	Y	V	D	S	N	T	I	N	T	M	R	K	A	I	D	R	N	A	E	V	Q	V	E	V	V	N	F	K	K	N	G	Q	R	F	V	N	F	L	T	M	I	P	V	R	D	E	T	G	E	Y	R	Y	S	M	G	F	Q	C	E
Template Known Secondary structure		T				S	S	S															T												T	T																T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions