Job Description P30855 Confidence 99.96% Date Thu Jan 5 11:46:34 GMT 2012 Rank 31 Aligned Residues 228 % Identity 14% Template c2ieeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable abc transporter extracellular-binding PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574. Resolution 2.20 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	S	K	K	N	L	V	I	A	V	H	K	S	Q	T	A	T	L	L	H	T	D	S	Q	Q	R	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L
Query Conservation
Alig confidence													.												.																														.
Template Conservation													.												.																														.
Template Sequence		I	K	D	K	G	K	I	V	V	A	T	.	S	G	T	L	Y	P	T	S	Y	H	D	.	T	D	K	L	T	G	Y	E	V	E	V	V	R	E	A	A	K	R	L	G	L	K	V	E	F	K	E	X	G	.	I	D	G	X	L	T	A	V	N	S	G	Q	V	D	A	A	A	N	D	I	D	V	T	K	D	R
Template Known Secondary structure						T							.		S		B	T	T	T	B				.						S												T	T	T										.	S	T	T							T	T	S	S	S				S	S		B
Template Predicted Secondary structure													.												.																														.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	.	S	M	R	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		E	E	K	F	A	F	S	T	P	Y	K	Y	S	Y	G	T	A	I	V	R	K	D	D	L	S	G	I	K	T	L	K	D	L	K	G	K	K	A	A	G	A	T	T	V	Y	X	E	V	A	R	K	Y	G	A	K	E	V	I	Y	D	N	A	T	N	E	Q	Y	L	K	D	V	A	N	G	R	T	D	V	I	L
Template Known Secondary structure			T	T							S											T	T	T	G	G	G		S	S	G	G	G	G	T	T								S									T	T							S	S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	.	V	R	Y	E	V	S	Q	N	W	L	D	T	G	N	L	A
Query Conservation																																																										.
Alig confidence																																																										.
Template Conservation
Template Sequence		N	D	Y	Y	L	Q	T	L	A	L	A	A	F	P	D	L	N	I	T	I	H	P	D	I	K	Y	X	P	N	K	Q	A	L	V	X	K	K	S	N	A	A	L	Q	K	K	X	N	E	A	L	K	E	X	S	K	D	G	S	L	T	K	L	S	K	Q	F	F	N	K	A	D	V	S
Template Known Secondary structure															T	T	S	S					S	S														T	T																		T	T										T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions