Job Description P30855 Confidence 97.84% Date Thu Jan 5 11:46:34 GMT 2012 Rank 297 Aligned Residues 186 % Identity 11% Template c2hzkB_ PDB info PDB header:ligand binding, transport protein Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form Resolution 1.70 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.		.	140	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.																																.			.								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.																																.			.								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	D	.	.	.	.	.	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	.	A	T	.	K	P	L	I	I	T	F	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.																																.			.								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.																																.			.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	S	K	X	L	S	E	A	T	D	G	N	F	Q	I	Q	V	F	S	A	G	E	L	V	P	G	L	Q	A	A	D	A	V	T	E	G	T	V	E	C	C	H	T	V	G	Y	Y	Y	W	G	K	D	P	T	F	A	L	A	A	A	V	P	F	S	L	S	A	R	G	I	N	A	W	H	Y	H	G	G	G
Template Known Secondary structure										T	T	T	T									T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		T					T	T			T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
																								146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	V	T	T	L	H	D	S	M	R	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.											.	.								.
Template Conservation																																																		.	.											.	.								.
Template Sequence		I	D	L	Y	N	E	F	L	S	Q	H	N	I	V	A	F	P	G	G	N	T	G	V	Q	X	G	G	W	F	R	R	E	I	N	T	V	A	D	X	Q	G	L	K	X	R	V	G	G	.	.	F	A	G	K	V	X	E	R	L	G	.	.	V	V	P	Q	Q	I	A	.	G	G	D	I	Y	P	A	L	E	K
Template Known Secondary structure										G	G	G	T											S	B						S	S				S	S	G	G	G	T	T								.	.								T	T	T	.	.								.	G	G	G
Template Predicted Secondary structure																																																		.	.											.	.								.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	.	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	V	R	Y	E	V	S	Q	N	W
Query Conservation																																															.
Alig confidence																																															.
Template Conservation
Template Sequence		G	T	I	D	A	T	E	W	V	G	P	Y	D	D	E	K	L	G	F	F	K	V	A	P	Y	Y	Y	Y	P	G	W	W	E	G	G	P	T	V	H	F	X	F	N	K	S	A	Y	E	G	L	T	P	T	Y	Q	S	L	L	R	T	A	C	H	A	A	D	A	N	X	L	Q	L	Y
Template Known Secondary structure		T	S		S												T	T	T	G	G	G	T								B	T	T		S	S															S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions