Job Description P30855 Confidence 90.68% Date Thu Jan 5 11:46:34 GMT 2012 Rank 390 Aligned Residues 173 % Identity 15% Template c2hxrA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator cynr; PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism Resolution 2.05 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure															.																																																																.	.	.
Query SS confidence															.																																																																.	.	.
Query Sequence		I	N	A	D	Y	L	N	L	L	K	R	A	L	.	N	I	K	L	T	L	R	E	Y	A	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	M	R	.	.	.
Query Conservation															.																																																																.	.	.
Alig confidence															.									.																													.	.	.	.																							.	.	.
Template Conservation																								.																													.	.	.	.
Template Sequence		F	I	G	P	L	X	A	D	F	Y	A	R	Y	P	S	I	T	L	Q	L	Q	E	.	X	S	Q	E	K	I	E	D	X	L	C	R	D	E	L	D	V	G	I	A	F	A	P	V	H	S	P	E	.	.	.	.	L	E	A	I	P	L	L	T	E	S	L	A	L	V	V	A	Q	H	H	P	L	A	V	H	E
Template Known Secondary structure		T													T	T	S							.												T	T	S		S						S	S				T	T	.	.	.	.																	T	T	S	G	G	G	G		S
Template Predicted Secondary structure																								.																													.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.					.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
				158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																		.	.	.	.	.															.
Query SS confidence		.	.																		.	.	.	.	.															.
Query Sequence		.	.	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	.	.	.	.	.	P	D	E	V	I	H	Q	S	F	P	K	A	T	I	.	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N
Query Conservation		.	.																		.	.	.	.	.															.
Alig confidence		.	.																		.	.	.	.	.															.																															.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.
Template Sequence		Q	V	A	L	S	R	L	H	D	E	K	L	V	L	L	S	A	E	F	A	T	R	E	Q	I	D	H	Y	C	E	K	A	G	L	H	P	Q	V	V	I	E	A	N	S	I	S	A	V	L	E	L	I	R	R	T	S	L	S	T	L	L	P	A	A	I	A	T	Q	H	.	.	.	.	.	.	.	D	G	L	K
Template Known Secondary structure					G	G	G	G	G	G								T	T	S													T	T										S												S	S		B					T							.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.								.	250	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	S	L	A	P	P	L	L	E	R	T	A	V	L	L	R	R	K	N	S	W	Q	T	A	A	A	K	A	F	L	H	X	A	L	D	K
Template Known Secondary structure						S	S		S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions