Job Description P30855 Confidence 97.39% Date Thu Jan 5 11:46:34 GMT 2012 Rank 320 Aligned Residues 189 % Identity 11% Template c2f5xC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd Resolution 1.72 Å

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		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.												120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																					.	.																.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence																					.	.																.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	.	.	D	H	Q	K	A	M	D	A	L	A	E	G	E	V	D	.	.	.	.	.	.	.	.	.	.	.	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	A	T	K	.	.	P	L	I	I	T	F	P	A	L	V	T
Query Conservation																					.	.																.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence																					.	.																.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		L	A	E	S	X	R	P	T	L	G	E	T	V	V	V	E	N	K	G	G	A	G	G	T	I	G	T	T	Q	V	A	R	A	Q	P	D	G	Y	S	I	L	L	X	H	A	G	F	S	T	A	P	S	L	Y	K	N	P	G	Y	E	P	Y	T	S	F	E	P	I	G	L	V	V	D	V	P	X	T	I	I	A
Template Known Secondary structure											S	S										G	G	G									T	S		S	S	S	S							T					G	G	G	T		S			S	S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.									.	.	.	.	.	.	.	170		.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.									.							.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.									.							.	.	.	.
Query Sequence		T	L	H	D	S	M	R	P	L	T	S	P	.	.	.	.	.	.	.	.	K	P	V	N	I	A	R	V	.	A	N	Y	P	P	D	.	.	.	.	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S
Query Conservation														.	.	.	.	.	.	.	.									.							.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.									.							.	.	.	.
Template Conservation
Template Sequence		R	G	D	F	P	P	N	N	I	K	E	L	A	E	Y	V	K	K	N	A	D	K	I	S	L	A	N	A	G	I	G	A	A	S	H	L	C	G	T	X	L	V	E	A	L	G	V	N	L	L	T	I	P	Y	K	G	T	A	P	A	X	N	D	L	L	G	K	Q	V	D	L	X	C	D	Q	T	T	N	T	T
Template Known Secondary structure			T	T		S			S												G	G	G						S		T	T	S														T									S	S										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240																			.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																.	.
Query Sequence		S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	F	L	T	R	K	E	.	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	.	.	T	N	E	V	R	Y	E	V	S	Q	N
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																.	.
Template Conservation
Template Sequence		Q	Q	I	T	S	G	K	V	K	A	Y	A	V	T	S	L	K	R	V	P	T	L	P	D	L	P	T	X	D	E	S	G	Y	K	G	F	E	V	G	I	W	H	G	X	W	A	P	K	G	T	P	K	P	V	V	D	K	L	V	K	S	L	Q	A	G	L	A	D	P	K	F	Q	E	R	X	K	Q	L
Template Known Secondary structure							T	S								S	S	S			T	T	S	T	T	S		B	T	T	T	T	T		T	T													T	T																													T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions