Job Description P30855 Confidence 97.22% Date Thu Jan 5 11:46:34 GMT 2012 Rank 324 Aligned Residues 157 % Identity 9% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

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		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.									.	.	.	.	.	.	.	170		.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.									.								.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.									.								.	.	.	.
Query Sequence		L	I	I	T	F	P	A	L	V	T	T	L	H	D	S	M	R	P	L	T	S	P	.	.	.	.	.	.	.	.	K	P	V	N	I	A	R	V	.	A	N	Y	P	P	D	E	.	.	.	.	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D
Query Conservation																								.	.	.	.	.	.	.	.									.								.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.									.								.	.	.	.
Template Conservation
Template Sequence		F	A	N	T	A	N	V	V	A	V	N	P	K	F	P	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G	T	C	G	V	L	H	L	X	G	E	S	F	K	X	A	T	G	T	D	I	V	H	V	P	Y	K	G	S	G	P	A	V	A	D	A	V	G	G	Q	I	E
Template Known Secondary structure													T	T	S	S		S	S										T	S	T	T	T						S		T	T	S														T									S	S											T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240																			.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																.	.
Query Sequence		Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	F	L	T	R	K	E	.	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	.	.	T	N	E
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																.	.
Template Conservation
Template Sequence		L	I	F	D	N	L	P	S	S	X	P	Q	I	Q	A	G	K	L	R	A	X	A	I	A	W	P	T	R	I	D	A	I	K	D	V	P	T	F	A	D	A	G	F	P	V	L	N	Q	P	V	W	Y	G	L	L	A	P	K	G	T	P	X	D	V	V	N	K	L	R	D	A	A	V	V	A	L	K	D	P	K
Template Known Secondary structure																T	T	S	S							S	S	S			G	G	G	T	T	S		B	T	T	T	T	T		G	G	G												T	T																		T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	Y	E	V	S	Q	N	W	L	D	T	G	N	L	A	F	L	N	K	P	L	E	L	T	E	H	E	K	Q	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	K	A	L	D	D	Q	G	S	A	P	S	G	N	T	P	E	E	F	A	K	E	I	K	E	Q	Y	D	W	A
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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