Job Description P30855 Confidence 73.44% Date Thu Jan 5 11:46:34 GMT 2012 Rank 456 Aligned Residues 197 % Identity 12% Template c1ztyA_ PDB info PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	F	P	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F
Query Conservation
Alig confidence																																																																.	.
Template Conservation																																																																.	.
Template Sequence		T	P	Q	L	Y	I	Q	C	R	N	P	N	Y	W	D	A	A	N	L	E	V	D	C	L	R	V	P	Q	I	A	N	N	D	Q	L	L	G	K	I	V	N	S	E	L	D	W	T	S	S	F	V	P	D	I	D	R	T	Y	A	A	A	N	.	.	P	N	H	H	Y	W	Y	P	A	A	G	T	Q	A	F	M
Template Known Secondary structure			S	S								T	T		T	T	G	G	G													S										T	T			S							T	T					T	G	G	G		.	.	T	T
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		243	.	.	.	.										.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	T	R	K	.	.	.	.	.	.	.	.	.	E	S	V	I	L	N	E	V	L	N	R	F	V	D	A	L	T	N	E	V	R	Y	E	V	S	Q	N	W	L	D	T	G	N	L	A	F	L	N	K	P	L	E	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.
Template Sequence		V	N	F	K	N	P	D	P	A	K	K	E	A	L	D	N	V	D	F	R	R	A	F	S	M	A	L	.	.	.	.	.	.	D	R	Q	T	I	I	D	I	A	F	Y	G	S	G	T	V	N	D	F	A	S	G	L	G	Y	A	F	E	A	W	S	D	E	A	T	H	K	K	Y	K	G	F	N	T	Y	D	V
Template Known Secondary structure				T	T		S	S								T													.	.	.	.	.	.										T	T	T		S						T	T				G	G	G	G	G	G											G	G	G	S
Template Predicted Secondary structure																													.	.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.							.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		292	.	.	.	.	.	.	.	300								.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.																												.
Query SS confidence											.	.	.	.	.	.	.																												.
Query Sequence		E	H	E	K	Q	W	I	K	Q	.	.	.	.	.	.	.	H	P	N	L	K	V	L	E	N	P	Y	S	P	P	Y	S	M	T	D	E	N	G	S	V	R	G	V	.	M	G	D	I	L	N	I	I	T	L	Q	T	G	L	N	F	S	P	I	T	V	S	H	N	I	H	A	G	T	Q	L	S	P	G	G	W
Query Conservation											.	.	.	.	.	.	.																												.
Alig confidence											.	.	.	.	.	.	.																												.																							.
Template Conservation																																																																				.
Template Sequence		E	G	S	K	K	L	L	A	K	A	G	F	K	D	V	N	G	D	G	F	V	E	T	P	S	G	K	S	F	E	L	L	I	Q	S	P	N	G	W	T	D	F	N	N	T	V	Q	L	A	V	E	Q	L	Q	E	V	G	I	K	A	K	A	R	T	P	E	.	F	A	V	Y	N	Q	A	M	L	E	G	T	Y
Template Known Secondary structure												T					S	S	S	S	S				T	T	S											T	T																	T	T	T										.										T	T
Template Predicted Secondary structure																																																																				.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.
		364	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	I	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	A	Y	T
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions