Job Description P30855 Confidence 99.80% Date Thu Jan 5 11:46:34 GMT 2012 Rank 163 Aligned Residues 222 % Identity 14% Template c1yaeB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: structure of the kainate receptor subunit glur6 agonist binding domain2 complexed with domoic acid Resolution 3.11 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.													.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	K	N	L	V	I	A	V	H	K	S	Q	T	A	T	L	L	H	T	D	S	Q	.	.	.	.	.	.	Q	R	V	R	G	I	N	A	D	Y	L	N	L	L	K	R	A	L	N	I	K	L	T	L	R	E	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	D	H	Q	K	A	M	D	A	L	A	E
Query Conservation																									.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.														.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		S	N	R	S	L	I	V	T	T	.	I	L	E	E	P	Y	V	L	F	K	K	S	D	K	P	L	Y	G	N	D	R	F	E	G	Y	C	I	D	L	L	R	E	L	S	T	I	L	G	F	T	Y	E	I	R	L	V	E	D	G	K	Y	G	A	Q	D	D	V	N	G	Q	W	N	G	M	V	R	E	L	I	D
Template Known Secondary structure		T	T								.			B	T	T	T	B						S	S				G	G	G	G			S																							S	S						B		T	T	T			B		S							T
Template Predicted Secondary structure											.
Template SS confidence
		429	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																									.	.																															.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.																															.	.	.	.	.	.	.	.	.
Query Sequence		G	E	V	D	I	V	L	S	H	L	V	T	S	P	P	L	N	N	D	I	A	A	T	K	P	L	I	I	T	F	P	A	L	V	T	T	L	H	D	.	.	S	M	R	P	L	T	S	P	K	P	V	N	I	A	R	V	A	N	Y	P	P	D	E	V	I	H	Q	S	F	P	.	.	.	.	.	.	.	.	.
Query Conservation																																									.	.																															.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.																															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	A	D	L	A	V	A	P	L	A	I	T	Y	V	R	E	K	V	I	D	F	S	K	P	F	M	T	L	G	I	S	I	L	Y	R	K	P	N	I	D	S	A	D	D	L	A	K	Q	T	K	I	E	Y	G	A	V	E	D	G	A	T	M	T	F	F	K	K	S	K	I	S	T	Y	D	K	M	W	A	F
Template Known Secondary structure		T	S		S				S	S		B							T	T							S																S									S	S					B	T	T	S											S
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
					185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	K	A	T	I	I	S	F	T	N	L	Y	Q	A	L	A	S	V	S	A	G	H	N	D	Y	F	I	G	S	N	I	I	T	S	S	M	I	S	R	Y	F	T	H	S	L	N	V	V	K	Y	Y	N	S	P	R	Q	Y	N	F	F	L	T	R	K	E	S	V	I	L	N	E	V	L	N	R	F	V	D
Query Conservation		.	.	.
Alig confidence		.	.	.																						.																			.	.							.																		.
Template Conservation																										.																			.	.							.																		.
Template Sequence		M	S	S	R	R	Q	S	V	L	V	K	S	N	E	E	G	I	Q	R	V	L	T	S	D	.	Y	A	F	L	M	E	S	T	T	I	E	F	V	T	Q	R	N	C	.	.	N	L	T	Q	I	G	.	G	L	I	D	S	K	G	Y	G	V	G	T	P	M	G	S	P	.	Y	R	D	K	I	T	I	A	I	L
Template Known Secondary structure					T						B	S	S											S	S	.															T	T		T	.	.	T					S	.	S		S	S										S	S		S	.	S
Template Predicted Secondary structure																										.																			.	.							.																		.
Template SS confidence
		709	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.		.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750			.	.	.	.	.	.		.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.		.	.	.	.	.	.	780	.	.	.
		262	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		A	L	.	T	N	E	V	R	Y	E	V	S	Q	N	W	L	D	T	G	N	L
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		Q	L	Q	E	E	G	K	L	H	M	M	K	E	K	W	W	R	G	N	G	C
Template Known Secondary structure							T										S
Template Predicted Secondary structure
Template SS confidence
		784	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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