Job Description P30855 Confidence 62.43% Date Thu Jan 5 11:46:34 GMT 2012 Rank 491 Aligned Residues 152 % Identity 14% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		905	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.				.	.	970	.	.	.	.	.	.	.	.	.	980	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		M	I	C	K	E	L	I	K	N	M	Q	G	D	L	S	L	E	S	H	P	G	I	G	T	T	F	T	I	T	I	P	V	E	I	S	Q	Q	V	A	T	V	E	A	K	A	E	Q	P	I	T	L	P	E	K	L	S	I	L	I	A	D	D	H	.	.	.	P	T	N	R	L	L	L	K	R	Q	L	N	L	L
Query Conservation																																																																	.	.	.
Alig confidence																																																			.	.													.	.	.
Template Conservation																																																			.	.
Template Sequence		I	V	Y	D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	.	.	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I
Template Known Secondary structure											T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										.	.	T	T	S					B						S	S	S		S											T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		982	.	.	.	.	.	.	.	990	.								.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010			.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.					.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.																				.	.																	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.																				.	.																	.	.	.	.
Query Sequence		G	Y	D	V	D	E	A	T	D	G	.	.	.	.	.	.	.	V	Q	A	L	H	K	V	S	M	Q	H	Y	D	L	L	I	T	D	V	.	.	N	M	P	N	M	D	G	F	E	L	T	R	K	L	R	E	.	.	.	.	Q	N	S	S	L	P	I	W	G	L	T	A	N	A	Q	A	N	E	R	E	K	G
Query Conservation												.	.	.	.	.	.	.																				.	.																	.	.	.	.
Alig confidence												.	.	.	.	.	.	.																				.	.																	.	.	.	.
Template Conservation
Template Sequence		G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A
Template Known Secondary structure		T							S	S				T	T													T	T		S									S			S	S	T																		S								T	T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		1049	1050					.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		L	S	.	.	.	.	C	G	M	N	L	C	L	F
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.
Template Conservation
Template Sequence		S	R	F	H	Q	A	S	P	I	G	S	V	I	I
Template Known Secondary structure						T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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