 |
Job Description | P37627 | Confidence | 31.96% | Date | Wed Jan 25 15:20:52 GMT 2012 |
Rank | 24 | Aligned Residues | 119 |
% Identity | 14% | Template | c1oidA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:protein usha; |
PDBTitle: 5'-nucleotidase (e. coli) with an engineered disulfide2 bridge (s228c, p513c)
|
Resolution | 2.1 Å |
|
 |
  |   |
288 | . | 290 | . | . | |
|
. | . | . | . | |
. | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  | . | . |
|
|
|
| . |
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
| . |
. |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | C | T | F | L | . |
. |
G | D | Q | T | . |
G | D | R | F | S | N | I | C | G | D | Q | F | I | I | D | L | L | K | R | I | M | S | I | N | E | N | V | H | V | L | A | G | N | H | E | T | N | C | N | G | N | Y | M | Q | N | F | T | R | M | K | P | L | D | E | D | T | Y | S | G | I | K | D | Y | P | V | C | F | Y |
Query Conservation |   |
|
|   |
|
| . | . |
|
|   |
| . |
|
|
|
|
|   |
|   |
|
|
|   |
|
|   |
|
|   |   |
|   |   |
|
|   |
|
|   |
|
|
|
|
|
|
|   |
|   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|   |   |
|
|   |   |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
| . | . |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   | . | . | . | . |
|   |
|   |   |   |   |
|
|
|
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |
Template Sequence |   |
S | V | L | L | L | S | G | G | D | I | N | T | G | V | P | E | S | D | L | Q | D | A | E | P | D | F | R | G | M | N | L | V | . |
. |
. |
. |
G | Y | D | A | M | A | I | G | N | H | E | F | D | N | P | L | T | V | L | R | Q | Q | E | K | W | A | K | F | P | L | L | S | A | N | I | Y | Q | K | S | T | G | E | R | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |
| S |
|
| S | S | S |
|  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |  |  |  | . | . | . | . | T |
|
|  |  |  |
|
| G | G | G | G | S | S |
|  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |
| S | S |  |  |  | T | T | T |
|
| B | S |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
|
|
|
. | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . |
  |
  |   |
365 | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | P | K | Y | K | I | M | A | N | H | H | G | I | T | F | D | D | Q | R | K | R | Y | I | I | G | P | I | T | V | S | I | D | E | M | T | N | A | . |
. |
. |
. |
. |
. |
. |
. |
L | D | P | V | E | L | A | A | I | I | N | K | K | H | H | A |
Query Conservation |   |
|   |   |   |
|
|
|   |   |
|
|
|
|   |   |
|
|
|
|
|   |
|   |
|
|   |
|   |
|   |   |   |
|
|   |
|   | . | . | . | . | . | . | . | . |   |
|
|   |
|
|
|   |
|   |
|
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |   |   | . | . | . | . | . | . | . |   |
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |
Template Sequence |   |
F | K | P | W | A | L | F | K | R | . |
. |
. |
. |
. |
. |
. |
Q | D | L | K | I | A | V | I | G | L | T | T | D | D | T | A | K | I | G | N | P | E | Y | F | T | D | I | E | F | R | K | P | A | D | E | A | K | L | V | I | Q | E | L | Q | Q |
Template Known Secondary structure |   |
S |
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | T | T |  |  |  |  |  |  |  |  |  |
| T | T |  |  |  |  | S |
| G | G | G | G | T | T |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
152 | . | . | . | . | . | . | . | 160 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|