Job Description P07604 Confidence 98.83% Date Thu Jan 5 11:00:21 GMT 2012 Rank 120 Aligned Residues 246 % Identity 18% Template c1s3sA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c Resolution 2.90 Å

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		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		D	S	H	N	E	H	V	V	I	N	G	Q	N	F	L	M	E	I	T	P	V	Y	L	Q	D	E	N	D	Q	H	V	L	T	G	A	V	V	M	L	R	S	T	I	R	M	G	R	Q	L	Q	N	V	A	A	Q	D	V	S	A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	.
Query Conservation																																																																																	.
Alig confidence																							.	.	.	.																																																							.
Template Conservation																							.	.	.	.
Template Sequence		K	G	D	I	F	L	V	R	G	G	M	R	A	V	E	F	K	V	V	E	T	.	.	.	.	D	P	S	P	Y	C	I	V	A	P	D	T	V	I	H	C	E	G	E	P	I	K	R	E	D	E	E	E	S	L	N	E	V	G	Y	D	D	V	G	G	C	R	K	Q	L	A	Q	I	K	E	M	V	E	L	P
Template Known Secondary structure		T	T								T	T											.	.	.	.	S	S	S	S						T	T							S			B				T	T				T	T	S			G	G	G			S
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
												223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																																					.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																																					.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	A	M	L	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S	I	P	E	D	A	V	E	S	E	L	F	G	H	A	P	E	G	K	K	G	F	F	E	Q	A	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																																					.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																													.	.	.													.	.	.	.	.																					.	.
Template Conservation																																								.	.	.													.	.	.	.	.
Template Sequence		L	R	H	P	A	L	F	K	A	I	G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	.	.	.	T	G	A	F	F	F	L	I	N	G	P	E	.	.	.	.	.	I	M	S	K	L	A	G	E	S	E	S	N	L	R	K	A	F	E	E	A	E	K
Template Known Secondary structure					T	T																		S	T	T	S	S												.	.	.		T											.	.	.	.	.			T	S		T	T
Template Predicted Secondary structure																																								.	.	.													.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.						.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
			291	.	.	.	.	.	.	.	.	300	.	.	.												.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure		.														.	.	.	.	.	.	.	.	.	.	.																																								.	.	.
Query SS confidence		.														.	.	.	.	.	.	.	.	.	.	.																																								.	.	.
Query Sequence		.	N	G	G	S	V	L	L	D	E	I	G	E	M	.	.	.	.	.	.	.	.	.	.	.	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I	C	A	T	Q	K	N	.	.	.	L	V	E	L	V	Q	K	G	M	F	R	E	D
Query Conservation		.														.	.	.	.	.	.	.	.	.	.	.																																								.	.	.
Alig confidence		.														.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.															.	.	.													.
Template Conservation																																											.	.	.	.	.	.	.	.	.																														.
Template Sequence		N	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K	.	.	.	.	.	.	.	.	.	Q	R	A	H	V	I	V	M	A	A	T	N	R	P	N	S	I	D	P	A	L	R	R	F	G	R	F	D	R	.
Template Known Secondary structure		T		S							T	G	G	G	T				S	S	S				T	T																	.	.	.	.	.	.	.	.	.	G	G	G									S		G	G	G	S		G	G	G	T	S	T	T	S	S			.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.										.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		L	Y	Y	R	L	N	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	.	N	T	V	L	T	R	Y	A	W	P	G	N	V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L
Query Conservation																																																		.
Alig confidence		.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation		.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	E	V	D	I	G	I	P	D	A	T	G	R	L	E	I	L	Q	I	H	T	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	M	K	L	A	D	D	V	D	L	E	Q	V	A	N	E	T	H	G	H	V	G	A	D	L	A	A	L	C	S	E	A	A	L	Q	A
Template Known Secondary structure		.	.	.	.	.	.																			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S				T	T								T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.														.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions