Job Description P07604 Confidence 99.80% Date Thu Jan 5 11:00:21 GMT 2012 Rank 15 Aligned Residues 253 % Identity 15% Template c1in8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v Resolution 1.90 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		A	F	S	Q	I	V	A	V	S	P	K	M	K	H	V	V	E	Q	A	Q	K	L	.	.	.	A	M	L	S	A	P	L	L	I	T	G	D	T	G	T	G	K	D	L	F	A	Y	A	C	H	Q	A	S	P	R	A	G	K	P	Y	L	A	L	N	C	A	S	I	P	E	D	A	V	E	S	E	L	F	G	H
Query Conservation																								.	.	.
Alig confidence																								.	.	.																												.	.	.																								.	.
Template Conservation																																																						.	.	.																								.	.
Template Sequence		S	L	D	E	F	I	G	Q	E	N	V	K	K	K	L	S	L	A	L	E	A	A	K	M	R	G	E	V	L	D	H	V	L	L	A	G	P	P	G	L	G	K	T	T	L	A	H	I	I	A	S	E	.	.	.	L	Q	T	N	I	H	V	T	S	G	P	V	L	V	K	Q	G	D	M	A	A	I	L	.	.
Template Known Secondary structure		S	G	G	G			S																			T										S	S	T	T	S	S												.	.	.		T								T	T	T			S									.	.
Template Predicted Secondary structure																																																						.	.	.																								.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	E	G	K	K	G	F	F	E	Q	A	N	G	G	S	V	L	L	D	E	I	G	E	M	S	P	R	M	Q	A	K	L	L	R	F	L	N	D	G	T	F	R	R	V	G	E	D	H	E	V	H	V	D	V	R	V	I	C	A	T	Q	K	N	L	V	E	L	V	Q	K	G	M	F	R	E	D	L	Y	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.																																.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.																																.	.	.
Template Sequence		.	.	.	.	.	.	.	.	T	S	L	E	R	G	D	V	L	F	I	D	E	I	H	R	L	N	K	A	V	E	E	L	L	Y	S	A	I	E	D	.	.	.	.	.	.	.	F	Q	I	D	I	Q	P	F	T	L	V	G	A	T	V	R	S	G	L	L	S	S	P	L	R	S	R	F	G	I	I	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.		T			T	T							T	G	G	G																.	.	.	.	.	.	.	S														S		G	G	G	S						T	T		S			.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.																																.	.	.
Template SS confidence
										98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.				.	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		R	L	N	V	L	T	L	N	L	P	P	L	R	D	C	P	Q	D	I	M	P	L	T	E	L	F	V	A	R	F	A	D	E	Q	G	V	P	R	P	K	L	A	A	D	L	N	T	V	L	T	R	Y	A	W	P	G	N	V	R	Q	L	K	N	A	I	Y	R	A	L	T	Q	L	D	.	.	.	G	Y	E	L
Query Conservation																																																																											.	.	.
Alig confidence		.	.	.	.	.	.									.	.	.	.	.	.																		.	.	.													.																					.	.	.
Template Conservation		.	.	.	.	.	.									.	.	.	.	.	.																		.	.	.													.
Template Sequence		.	.	.	.	.	.	L	E	L	D	F	Y	T	V	.	.	.	.	.	.	K	E	L	K	E	I	I	K	R	A	A	S	L	M	D	V	E	.	.	.	I	E	D	A	A	A	E	M	I	A	K	R	.	S	R	G	T	P	R	I	A	I	R	L	T	K	R	V	R	D	M	L	T	V	V	K	A	D	R	I
Template Known Secondary structure		.	.	.	.	.	.									.	.	.	.	.	.														T	T			.	.	.	B											T	.	S	T	T																				T		S	S	B
Template Predicted Secondary structure		.	.	.	.	.	.									.	.	.	.	.	.																		.	.	.													.
Template SS confidence
								175	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.					.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		R	P	Q	D	I	L	L	P	D	Y	D	A	A	T	V	A	V	G	E	D	A	M	E	G	S	L	D	E	I	T	S	R	F	E	R	S	V	L	T	Q	L	Y	R	N	Y	P	S	.	.	.	.	T	R	K	L	A	K	R	L	G	V	S	H	T	A	I	A	N	K	L	R	E	Y
Query Conservation																																																	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	T	D	I	V	L	K	T	M	E	V	L	N	I	D	D	E	G	.	.	.	.	.	.	.	.	.	.	.	L	D	E	F	D	R	K	I	L	K	T	I	I	E	I	Y	R	G	G	P	V	G	L	N	A	L	A	A	S	L	G	V	E	A	D	T	L	S	E	V	Y	E	P	Y
Template Known Secondary structure														T			T	T		.	.	.	.	.	.	.	.	.	.	.																S	T	T			B										T	S								T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.												.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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