15 c1in8A_ Probab=99.80   E-value=1e-16  Score=123.07  Aligned_columns=253  Identities=15%

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCC
Q ss_conf             2110001211489886314420---1458608985076578899999998507534797699981008988988875232
Q batch____       202 AFSQIVAVSPKMKHVVEQAQKL---AMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELFGH  278 (513)
Q Consensus       202 ~f~~ii~~S~~~~~~~~~~~~~---a~~~~pvli~Ge~GtGK~~~A~~ih~~s~~~~~~fv~i~c~~~~~~~~~~~lfg~  278 (513)
                      +|++++|.+....++...+...   .....+|+|+|++||||+++|++|+..   .+.+|+.++|............+  
T Consensus         7 ~~~d~iG~e~~~~~L~~~i~~~~~~~~~~~~ill~GppGtGKT~la~~ia~~---l~~~~~~i~~~~~~~~~~~~~~~--   81 (298)
T c1in8A_           7 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE---LQTNIHVTSGPVLVKQGDMAAIL--   81 (298)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH---HTCCEEEEETTTCCSHHHHHHHH--
T ss_pred             CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH---CCCCEEEEECCCCCCCHHHHHHH--
T ss_conf             9778127099999999999998633888885799869889888999999997---09979999415533201245668--


Q ss_pred             CCCCCCCHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEECCCCCCHHHHHHCCCCHHHHHH
Q ss_conf             23786484562479859982258899899999999984594877589874684047860688997889876997368886
Q batch____       279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGMFREDLYY  358 (513)
Q Consensus       279 ~~~~~~g~~~~a~~gtl~l~~i~~l~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~r~i~~t~~~l~~~~~~~~f~~~l~~  358 (513)
                              ....+++++|+|+++.++...|..++..+++       ........+.++...............|...   
T Consensus        82 --------~~~~~~~il~~dei~~l~~~~~~~l~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  143 (298)
T c1in8A_          82 --------TSLERGDVLFIDEIHRLNKAVEELLYSAIED-------FQIDIQPFTLVGATVRSGLLSSPLRSRFGII---  143 (298)
T ss_dssp             --------HTCCTTCEEEEETGGGCCHHHHHHHHHHHHH-------SCCCCCCCEEEEEESCGGGSCHHHHTTCSEE---
T ss_pred             --------HHHCCCCEEEEEEHHHCCHHHHHHHHHHHHC-------CCCCCCEEEECCCCCCHHHCCCHHHHHHHHH---
T ss_conf             --------8513799899942367698999999999705-------5334440665265458563146433234431---


Q ss_pred             HCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC---CCCC
Q ss_conf             3272488608634460017999999999999994689866798999885128999836899999999998568---9811
Q batch____       359 RLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLD---GYEL  435 (513)
Q Consensus       359 ~l~~~~i~iPpLreR~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNi~eL~~~i~~~~~~~~---~~~i  435 (513)
                            +..++...      .-...++...+.+.+..   ++.++++.+..+ |+||+|++.+++++++..+.   .+.|
T Consensus       144 ------~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~-~~g~~R~~~~ll~~~~~~~~~~~~~~i  207 (298)
T c1in8A_         144 ------LELDFYTV------KELKEIIKRAASLMDVE---IEDAAAEMIAKR-SRGTPRIAIRLTKRVRDMLTVVKADRI  207 (298)
T ss_dssp             ------EECCCCCH------HHHHHHHHHHHHHTTCC---BCHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred             ------CCCCCCCH------HHHHHHHHHHHHHCCCC---CCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             ------13678989------99999999999982985---588999999998-399989999999999999985298876


Q ss_pred             CHHHHCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHCCCHHHHHHHHHHC
Q ss_conf             69881200102366665654457898999999999999999996799----8899988489988999999980
Q batch____       436 RPQDILLPDYDAATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPS----TRKLAKRLGVSHTAIANKLREY  504 (513)
Q Consensus       436 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~i~~~~~~~gn----~~~aA~~LGisr~tL~rklk~~  504 (513)
                      +.+++.............           ..+.++++++.+......    ....|+.||++.+++..++..|
T Consensus       208 ~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~ia~~l~~~~~~~~~~~~~~  269 (298)
T c1in8A_         208 NTDIVLKTMEVLNIDDEG-----------LDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPY  269 (298)
T ss_dssp             CHHHHHHHHHHHTCCTTC-----------CCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHTTHHH
T ss_pred             CHHHHHHHHHHHCCCCHH-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             989999999751255101-----------11468999999999817695479999998599989999997657