Job Description P0AFK0 Confidence 100.00% Date Thu Jan 5 11:26:33 GMT 2012 Rank 2 Aligned Residues 429 % Identity 28% Template d1vpba_ SCOP info Putative modulator of DNA gyrase, PmbA/TldD Putative modulator of DNA gyrase, PmbA/TldD Putative modulator of DNA gyrase, PmbA/TldD Resolution 1.75

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	Q	R	K	I	L	E	E	A	V	S	T	A	L	E	L	A	S	G	K	S	D	G	A	E	V	A	V	S	K	T	T	G	I	S	V	S	T	R	Y	G	E	V	E	N	V	E	F	N	S	D	G	A	L	G	I	T	V	Y	H	Q	N	R	K	G	S	A	S	S	T	D	L	S	P	Q	A	I	A	R
Query Conservation
Alig confidence																			.	.	.																						.	.
Template Conservation																			.	.	.																						.	.
Template Sequence		D	E	N	K	K	L	A	Q	W	A	M	D	Y	A	L	K	N	.	.	.	G	C	Q	A	A	K	V	L	L	Y	S	S	S	N	T	S	F	E	L	R	D	.	.	M	D	R	L	Q	Q	A	S	E	G	G	L	S	L	S	L	Y	V	D	G	R	Y	G	S	I	S	T	N	R	L	N	R	K	E	L	E	T
Template Known Secondary structure																		T	.	.	.	T		S																			.	.																			T	T								S
Template Predicted Secondary structure																			.	.	.																						.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		T	V	Q	A	A	L	D	I	A	R	Y	T	S	P	D	P	C	A	G	V	A	D	K	E	L	L	A	F	D	A	P	.	.	.	D	L	D	L	F	H	P	A	E	V	S	P	D	E	A	I	E	L	A	A	R	A	E	Q	A	A	L	Q	A	D	K	R	I	T	N	T	E	G	G	S	F	N	S	H	Y	G
Query Conservation																																	.	.	.
Alig confidence																																	.	.	.																																					.
Template Conservation																																																																								.
Template Sequence		F	I	K	N	G	I	D	S	T	R	Y	L	A	K	D	E	A	R	V	L	A	D	P	S	R	Y	Y	K	G	G	K	P	D	L	K	L	Y	D	A	K	F	A	S	L	N	P	D	D	K	I	E	M	A	K	A	V	A	E	E	A	L	G	K	D	E	R	I	I	S	V	.	G	S	S	Y	G	D	G	E	D
Template Known Secondary structure											T	T	S				T	T						G	G	G	B			S								S		T	T	G	G	G																T	T	T	T	S		T	T					.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		V	K	V	F	G	N	S	H	G	M	L	Q	G	Y	C	S	T	R	H	S	L	S	S	C	V	I	A	E	.	E	N	G	D	M	E	R	D	Y	A	Y	T	I	G	R	A	M	S	D	L	Q	T	P	E	W	V	G	A	D	C	A	R	R	T	L	S	R	L	S	P	R	K	L	S	T	M	K	A	P	V	I
Query Conservation																														.
Alig confidence																														.																						.
Template Conservation																																																				.
Template Sequence		F	A	Y	R	L	I	S	N	G	F	E	G	E	T	K	S	T	W	Y	S	L	S	A	D	I	T	I	R	G	E	G	E	A	R	P	S	A	Y	W	Y	E	S	S	L	Y	M	N	D	L	I	.	K	K	G	I	G	Q	K	A	L	E	R	V	L	R	K	L	G	Q	K	K	V	Q	S	G	K	Y	T	M	V
Template Known Secondary structure								T	T	T																					S	T	T												S	S	G	G	G	S		.		S	S											T	T	T	T		B
Template Predicted Secondary structure																																																				.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	N	E	V	A	T	G	L	F	G	H	L	V	G	A	I	A	G	G	S	V	Y	R	K	S	T	F	L	L	D	S	L	G	K	Q	I	L	P	D	W	L	T	I	E	E	H	P	H	L	L	K	G	L	A	S	T	P	F	D	S	E	G	V	R	T	E	R	R	D	I	I	K	D	G	I	L	T	Q	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	P	M	N	S	S	R	L	L	S	P	M	I	S	A	L	N	G	S	A	L	Q	Q	K	N	S	F	L	L	N	K	L	N	E	K	I	A	S	D	R	L	T	L	T	D	E	P	H	L	V	K	A	S	G	A	R	Y	F	D	N	E	G	I	A	T	E	R	R	S	I	F	D	K	G	V	L	N	T	Y
Template Known Secondary structure				T	T	T											T	T	B						T	T			T	T	T	T		T	T	S	B		S		T	T							T	T		T	T		T	T			S	B		T	T		B	B									T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	S	Y	S	A	R	K	L	G	L	K	S	T	G	H	A	G	G	I	H	N	W	R	I	A	G	Q	G	L	S	F	E	Q	M	L	K	E	M	G	T	G	L	V	V	T	E	L	M	G	Q	G	V	S	A	I	T	G	D	Y	S	R	G	A	A	G	F	W	V	E	N	G	E	I	Q	Y	P	V	S
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		F	I	D	T	Y	N	A	K	K	M	G	V	D	P	T	I	S	G	S	S	.	.	I	L	V	M	E	T	G	D	K	N	L	D	G	L	I	A	G	V	E	K	G	I	L	V	T	G	F	N	G	G	N	N	N	S	S	T	G	D	F	S	Y	G	I	E	G	F	L	I	E	N	G	K	L	T	Q	P	V	S
Template Known Secondary structure		B										T	S					S	S		S	.	.								S									T		S															T	T	T														T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.			.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	T	I	A	G	N	L	K	D	M	W	R	N	I	V	T	V	G	N	D	I	E	T	R	S	N	I	Q	C	G	S	V	L	L	P	E	M	K	I	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	M	N	V	T	G	N	L	I	T	L	W	N	S	L	V	A	T	G	N	D	P	R	L	N	S	S	W	R	I	P	S	L	V	F	E	G	V	D	F	S	G
Template Known Secondary structure															T						S				T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.