Job Description P0AFK0 Confidence 100.00% Date Thu Jan 5 11:26:33 GMT 2012 Rank 3 Aligned Residues 421 % Identity 28% Template d1vl4a_ SCOP info Putative modulator of DNA gyrase, PmbA/TldD Putative modulator of DNA gyrase, PmbA/TldD Putative modulator of DNA gyrase, PmbA/TldD Resolution 1.95

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	E	A	V	S	T	A	L	E	L	A	S	G	K	S	D	G	A	E	V	A	V	S	K	T	T	G	I	S	V	S	T	R	Y	G	E	V	E	N	V	E	F	N	S	D	G	A	L	G	I	T	V	Y	H	Q	N	R	K	G	S	A	S	S	T	D	L	S	P	Q	A	I	A	R	T	V	Q	A	A	L
Query Conservation
Alig confidence																																																																							.	.
Template Conservation																																																																							.	.
Template Sequence		F	E	E	F	K	D	R	L	F	A	L	A	K	K	N	G	V	E	V	Q	I	S	F	L	E	T	R	E	F	S	L	R	L	A	N	G	D	L	D	Q	Y	T	D	A	G	K	F	N	V	E	I	K	V	L	K	D	G	K	T	G	T	F	R	T	Q	V	L	E	N	.	.	P	E	K	C	F	E	E	A	L
Template Known Secondary structure																	T																			T	T																				T	T								S	S				.	.
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	A	R	Y	T	S	P	D	P	C	A	G	V	A	D	K	E	L	L	A	F	D	A	P	D	L	D	L	F	H	P	A	E	V	S	P	D	E	A	I	E	L	A	A	R	A	E	Q	A	A	L	Q	A	D	K	R	I	T	N	T	E	G	G	S	F	N	S	H	Y	G	V	K	V	F	G	N	S	H	G
Query Conservation
Alig confidence																											.	.	.	.	.																								.
Template Conservation																											.	.	.	.	.																								.
Template Sequence		S	N	L	Q	V	K	K	E	Y	F	F	E	G	G	K	E	Y	R	E	M	E	T	Y	V	G	.	.	.	.	.	R	F	E	K	L	S	V	K	E	K	M	D	M	A	K	K	A	H	E	S	A	A	K	.	D	E	R	V	V	M	V	P	T	V	M	Y	K	D	M	V	I	K	K	I	I	T	N	T	L	G
Template Known Secondary structure			G	G	G									S													.	.	.	.	.		G	G	G	S																			.	S	T	T																					T	T	S
Template Predicted Secondary structure																											.	.	.	.	.																								.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	Q	G	Y	C	S	T	R	H	S	L	S	S	C	V	I	A	E	E	N	G	D	M	E	R	D	Y	A	Y	T	I	G	R	A	M	S	D	L	Q	T	P	E	W	V	G	A	D	C	A	R	R	T	L	S	R	L	S	P	R	K	L	S	T	M	K	A	P	V	I	F	A	N	E	V	A	T	G	L	F
Query Conservation
Alig confidence																								.																		.
Template Conservation																								.																		.
Template Sequence		L	D	V	E	S	Q	M	D	G	G	F	L	F	A	M	A	I	A	R	D	A	N	.	P	R	S	G	S	W	Y	E	L	A	R	T	P	E	D	L	N	.	P	E	E	I	G	K	R	A	A	E	E	A	I	S	L	I	G	S	K	T	I	P	S	G	K	Y	P	V	L	M	R	N	T	A	L	L	D	L	M
Template Known Secondary structure																					S	S	S	.											S	S	G	G	G			.															T	T	T		B				S																G
Template Predicted Secondary structure																								.																		.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	L	V	G	A	I	A	G	G	S	V	Y	R	K	S	T	F	L	L	D	S	L	G	K	Q	I	L	P	D	W	L	T	I	E	E	H	P	H	L	L	K	G	L	A	S	T	P	F	D	S	E	G	V	R	T	E	R	R	D	I	I	K	D	G	I	L	T	Q	W	L	L	T	S	Y	S	A	R	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	M	F	I	P	M	I	S	A	E	N	V	Q	K	N	L	S	P	L	K	G	K	L	G	E	Q	V	G	N	P	A	V	S	I	K	D	L	P	Y	H	P	K	G	L	S	S	T	P	F	D	D	E	G	V	P	T	T	E	K	F	V	L	E	N	G	V	L	K	T	F	L	H	N	L	K	T	A	R	K	E
Template Known Secondary structure		G	G	G					B						T	T			T	T	T	T		T	T	S	B		S		T	T							S			T	T		T	T			S	B		T	T	S		B									T	T						B
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.					.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure											.	.	.	.																																	.			.
Query SS confidence											.	.	.	.																																	.			.
Query Sequence		G	L	K	S	T	G	H	A	G	.	.	.	.	G	I	H	N	W	R	I	A	G	Q	G	L	S	F	E	Q	M	L	K	E	M	G	T	G	L	V	V	T	E	L	M	G	.	Q	G	.	V	S	A	I	T	G	D	Y	S	R	G	A	A	G	F	W	V	E	N	G	E	I	Q	Y	P	V	S	E	I	T	I
Query Conservation											.	.	.	.																																	.			.
Alig confidence											.	.	.	.																																	.			.
Template Conservation
Template Sequence		G	V	E	P	T	G	N	G	F	V	G	G	I	R	P	V	N	L	M	L	M	P	G	E	K	S	F	E	E	L	L	K	E	M	D	R	G	V	V	I	T	E	V	E	G	M	H	A	G	A	N	S	I	S	G	E	F	S	L	F	A	K	G	Y	W	V	E	N	G	E	I	A	H	G	V	E	D	I	T	I
Template Known Secondary structure		T					S				T	T					S								S	B											S														B		T	T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	N	L	K	D	M	W	R	N	I	V	T	V	G	N	D	I	E	T	R	S	N	I	Q	C	G	S	V	L	L	P	E	M	K	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	N	F	L	D	L	L	R	K	I	V	L	V	G	N	D	V	K	V	S	Q	H	T	I	A	P	S	V	L	V	E	V	L	D	V	A
Template Known Secondary structure											T					B	S						S	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.