Job Description P0AFK0 Confidence 100.00% Date Thu Jan 5 11:26:33 GMT 2012 Rank 1 Aligned Residues 439 % Identity 50% Template c3qtdC_ PDB info PDB header:gene regulation Chain: C: PDB Molecule:pmba protein; PDBTitle: crystal structure of putative modulator of gyrase (pmba) from2 pseudomonas aeruginosa pao1 Resolution 2.70 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	V	E	A	Q	R	K	I	L	E	E	A	V	S	T	A	L	E	L	A	S	G	K	S	D	G	A	E	V	A	V	S	K	T	T	G	I	S	V	S	T	R	Y	G	E	V	E	N	V	E	F	N	S	D	G	A	L	G	I	T	V	Y	H	Q	N	R	K	G	S	A	S	S	T	D	L	S	P	Q	A
Query Conservation
Alig confidence																			.	.	.
Template Conservation																			.	.	.
Template Sequence		S	V	L	P	D	L	R	E	Q	V	E	Q	I	I	A	E	A	.	.	.	R	R	Q	G	A	S	A	C	E	V	A	V	S	L	E	Q	G	L	S	T	S	V	R	Q	G	E	V	E	T	V	E	F	N	R	D	Q	G	F	G	I	T	L	Y	A	G	Q	R	K	G	S	A	S	T	S	A	T	G	E	A	A
Template Known Secondary structure		G	G																.	.	.			T	T		S																		T	T																				T	T								S			S
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	R	T	V	Q	A	A	L	D	I	A	R	Y	T	S	P	D	P	C	A	G	V	A	D	K	E	L	L	A	F	D	A	P	D	L	D	L	F	H	P	A	E	V	S	P	D	E	A	I	E	L	A	A	R	A	E	Q	A	A	L	Q	A	D	K	R	I	T	N	T	E	G	G	S	F	N	S	H	Y	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	E	T	V	A	A	A	L	A	I	A	R	H	T	S	E	D	E	C	A	G	L	A	D	A	A	L	X	A	R	E	L	P	E	L	D	L	Y	H	P	W	S	L	S	P	E	Q	A	V	E	R	A	L	A	C	E	A	A	A	F	A	A	D	K	R	V	T	K	A	D	G	T	T	L	N	T	H	Q	G
Template Known Secondary structure																S				T	T		S				G	G	G	B		S																																		T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	V	F	G	N	S	H	G	M	L	Q	G	Y	C	S	T	R	H	S	L	S	S	C	V	I	A	E	E	N	G	D	M	E	R	D	Y	A	Y	T	I	G	R	A	M	S	D	L	Q	T	P	E	W	V	G	A	D	C	A	R	R	T	L	S	R	L	S	P	R	K	L	S	T	M	K	A	P	V	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	R	V	Y	G	N	S	H	G	F	I	G	G	Y	A	S	T	R	H	S	L	S	C	V	X	I	A	E	G	E	G	Q	X	Q	R	D	Y	W	Y	D	V	N	R	R	G	E	A	L	A	S	A	E	S	I	G	R	R	A	A	E	R	A	A	S	R	L	G	A	R	P	V	Q	T	A	E	V	P	V	L	F
Template Known Secondary structure								T	T	S																					T	T												S	S	G	G	G	S																	T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	E	V	A	T	G	L	F	G	H	L	V	G	A	I	A	G	G	S	V	Y	R	K	S	T	F	L	L	D	S	L	G	K	Q	I	L	P	D	W	L	T	I	E	E	H	P	H	L	L	K	G	L	A	S	T	P	F	D	S	E	G	V	R	T	E	R	R	D	I	I	K	D	G	I	L	T	Q	W	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	E	I	A	V	G	L	F	G	H	F	L	G	A	I	S	G	G	S	L	Y	R	K	S	S	F	L	E	G	A	L	G	Q	R	L	F	P	E	W	L	S	I	D	E	R	P	H	L	V	G	A	L	G	S	A	S	F	D	S	D	G	L	A	T	Y	A	K	P	F	V	E	N	G	E	L	V	S	Y	V
Template Known Secondary structure																	T	B						T	T			T	T	T	T		T	T	S	B		S		T	T							T	T		T	T		T	T			S	B		T	T		B	B									T	T						B
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	S	Y	S	A	R	K	L	G	L	K	S	T	G	H	A	G	G	I	H	N	W	R	I	A	G	Q	G	L	S	F	E	Q	M	L	K	E	M	G	T	G	L	V	V	T	E	L	M	G	Q	G	V	S	A	I	T	G	D	Y	S	R	G	A	A	G	F	W	V	E	N	G	E	I	Q	Y	P	V	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	T	Y	S	G	R	K	L	G	L	P	S	T	A	N	A	G	G	V	H	N	L	F	V	S	H	G	D	E	D	Q	A	A	L	I	R	R	X	E	R	G	L	L	V	T	E	L	X	G	Q	G	V	N	L	V	T	G	D	Y	S	R	G	A	A	G	Y	W	V	E	N	G	E	I	Q	F	P	V	Q	E
Template Known Secondary structure											T					S		T	T			S	S							S												S									S	S				T	T	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	I	A	G	N	L	K	D	M	W	R	N	I	V	T	V	G	N	D	I	E	T	R	S	N	I	Q	C	G	S	V	L	L	P	E	M	K	I	A	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	I	A	A	N	L	R	D	L	F	R	R	I	V	A	V	G	K	D	I	E	R	R	G	N	L	H	T	G	S	V	L	V	E	S	X	X	V	A	G	R
Template Known Secondary structure														T						S					S	S	S														.
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.