Job Description P33369 Confidence 100.00% Date Thu Jan 5 11:52:09 GMT 2012 Rank 5 Aligned Residues 393 % Identity 15% Template d1ek9a_ SCOP info Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Resolution 2.10

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	T	S	L	I	N	N	A	L	Q	N	A	P	D	M	Q	V	A	E	Q	R	I	Q	L	A	E	A	Q	A	K	A	V	A	T	Q	D	G	P	Q	I	D	F	S	A	D	M	E	R	Q	K	M	S	A	E	G	L	M	G	P	F	A	L	N	D	P	A	A	G	T	T	G	P	W	Y	T	N	G	T	F
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	X	Q	V	Y	Q	Q	A	R	L	S	N	P	E	L	R	K	S	A	A	D	R	D	A	A	F	E	K	I	N	E	A	R	S	P	L	L	P	Q	L	G	L	G	A	D	Y	T	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	Y	R	D	A	N	G	I	N	S	N	A	T	S	A
Template Known Secondary structure																																				G	G	G	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S	T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.															.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	T	A	G	W	H	L	D	I	W	G	K	N	R	A	E	V	T	A	R	L	G	T	V	K	A	R	A	A	E	R	E	Q	T	R	Q	L	L	A	G	S	V	A	R	L	Y	W	E	W	Q	T	Q	A	A	L	N	T	V	L	Q	Q	I	E	K	E	Q	N	T	I	I	A	T	D	R	Q	L	Y	Q	N
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		S	L	Q	L	T	Q	S	I	F	D	X	S	K	W	.	R	A	L	T	L	Q	E	K	A	A	G	I	Q	D	V	T	Y	Q	T	D	Q	Q	T	L	I	L	N	T	A	T	A	Y	F	N	V	L	N	A	I	D	V	L	S	Y	T	Q	A	Q	K	E	A	I	Y	R	Q	L	D	Q	T	T	Q	R	F	N	V
Template Known Secondary structure																.																																																																	T
Template Predicted Secondary structure																.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		G	I	T	S	S	V	E	G	V	E	T	D	I	N	A	S	K	T	R	Q	Q	L	N	D	V	A	G	K	M	K	I	I	E	A	R	L	S	A	L	T	N	N	Q	T	K	S	L	K	L	K	P	V	A	L	P	K	V	A	S	Q	L	P	.	D	E	L	G	Y	S	L	L	A	R	R	A	D	L	Q	A	A
Query Conservation																																																																.
Alig confidence																																																																.
Template Conservation
Template Sequence		G	L	V	A	I	T	D	V	Q	N	A	R	A	Q	Y	D	T	V	L	A	N	E	L	T	A	R	N	N	L	D	N	A	V	E	Q	L	R	Q	I	T	G	N	Y	Y	P	E	L	A	A	L	N	V	E	N	F	K	T	D	K	P	Q	P	V	N	A	L	L	K	E	A	E	K	R	N	L	S	L	L	Q	A
Template Known Secondary structure		T	S	S																																						S				S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.											.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		H	W	Y	V	E	S	S	L	S	T	I	D	A	A	K	A	A	F	Y	P	D	I	N	L	M	A	F	L	Q	Q	D	A	L	H	L	S	D	L	F	.	.	.	.	.	.	.	.	.	.	R	H	S	A	Q	Q	M	G	V	T	A	G	L	T	L	P	I	F	D	S	G	R	L	N	A	N	L	D	I	A	K
Query Conservation																																									.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	S	Q	D	L	A	R	E	Q	I	R	Q	A	Q	D	G	H	L	P	T	L	D	L	T	A	S	T	G	I	S	D	T	S	Y	S	G	S	K	T	R	G	A	A	G	T	Q	Y	D	D	S	N	X	G	Q	N	K	V	G	L	S	F	S	L	P	I	Y	Q	G	G	X	V	N	S	Q	V	K	Q	A	Q
Template Known Secondary structure																	G	G	G	S																		S	T	T	S	S	S	S			S	T	T	S																			S	T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	S	N	L	S	I	A	S	Y	N	K	A	V	V	E	A	V	N	D	V	A	R	A	A	S	Q	V	Q	T	L	A	E	K	N	Q	H	Q	A	Q	I	E	R	D	A	L	R	V	V	G	L	A	Q	A	R	F	N	A	G	I	I	A	G	S	R	V	S	E	A	R	I	P	A	L	R	E	R	A	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	N	F	V	G	A	S	E	Q	L	E	S	A	H	R	S	V	V	Q	T	V	R	S	S	F	N	N	I	N	A	S	I	S	S	I	N	A	Y	K	Q	A	V	V	S	A	Q	S	S	L	D	A	X	E	A	G	Y	S	V	G	T	R	T	I	V	D	V	L	D	A	T	T	T	L	Y	N	A	K	Q	E	L
Template Known Secondary structure																																																											T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	Q	G	Q	W	L	D	A	S	I	Q	L	T	G	A	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	A	R	Y	N	Y	L	I	N	Q	L	N	I	K	S	A	L	G
Template Known Secondary structure																				T
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions