Job Description P33369 Confidence 100.00% Date Thu Jan 5 11:52:09 GMT 2012 Rank 2 Aligned Residues 428 % Identity 23% Template c3pikA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusc; PDBTitle: outer membrane protein cusc Resolution 2.30 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	P	M	H	E	T	R	Q	A	L	S	Q	Q	T	P	A	A	Q	V	D	T	A	L	P	T	A	L	K	M	V	G	Q	T	X	Q	W	W	L	E	Y	H	D	N	Q	L	T	S	L	I	N	N	A	L	Q	N	A	P	D	M	Q	V	A	E	Q	R	I	Q	L	A	E	A	Q	A	K	A	V	A	T	Q
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	S	L	A	P	D	Y	Q	R	P	A	M	P	V	P	Q	Q	F	S	L	Y	Q	N	A	.	.	.	.	.	.	.	.	.	.	.	G	W	R	T	F	F	V	D	N	Q	V	K	T	L	I	S	E	A	L	V	N	N	R	D	L	R	M	A	T	L	K	V	Q	E	A	R	A	Q	Y	R	L	T	D	A	D
Template Known Secondary structure														S	S		S	B	S							.	.	.	.	.	.	.	.	.	.	.						B																																							T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.												.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	P	Q	I	D	F	S	A	D	M	E	R	Q	K	M	S	A	E	G	L	M	G	P	F	A	L	N	D	P	A	A	G	T	T	G	P	W	Y	T	N	G	T	F	G	L	T	A	G	W	H	L	D	I	W	G	K	N	R	A	E	V	T	A	R	L	G	T	V	K	A	R	A	A	E	R	E	Q	T	R
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Y	P	Q	L	N	G	E	G	S	G	S	W	S	G	N	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	T	A	T	T	R	E	F	S	T	G	L	N	A	S	F	D	L	D	F	F	G	R	L	K	N	M	S	E	A	E	R	Q	N	Y	L	A	T	E	E	A	Q	R	A	V	H
Template Known Secondary structure		T	S															S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																				T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.																.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	A	G	S	V	A	R	L	Y	W	E	W	Q	T	Q	A	A	L	N	T	V	L	Q	Q	I	E	K	E	Q	N	T	I	I	A	T	D	R	Q	L	Y	Q	N	G	I	T	S	S	V	E	G	V	E	T	D	I	N	A	S	K	T	R	Q	Q	L	N	D	V	A	G	K	M	K	I	I	E	A	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	L	V	S	N	V	A	Q	S	Y	F	N	Q	Q	L	A	Y	A	Q	L	Q	I	A	E	E	T	L	R	N	Y	Q	Q	S	Y	A	F	V	E	K	Q	L	L	T	G	S	S	N	V	L	A	L	E	Q	A	R	G	V	I	E	S	T	R	S	D	I	A	K	R	Q	G	E	L	A	Q	A	N	N	A	L
Template Known Secondary structure																																												T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		S	A	L	T	N	N	Q	T	K	S	L	K	L	K	P	V	A	L	P	K	V	A	S	Q	L	P	.	D	E	L	G	Y	S	L	L	A	R	R	A	D	L	Q	A	A	H	W	Y	V	E	S	S	L	S	T	I	D	A	A	K	A	A	F	Y	P	D	I	N	L	M	A	F	L	Q	Q	D	A	L	H	L	S
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		Q	L	L	L	G	S	Y	G	K	L	P	Q	A	Q	T	V	N	S	D	S	L	Q	S	V	K	L	P	A	G	L	S	S	Q	I	L	L	Q	R	P	D	I	M	E	A	E	H	A	L	M	A	A	N	A	N	I	G	A	A	R	A	A	F	F	P	S	I	S	L	T	S	G	I	S	T	A	S	S	D	L	S
Template Known Secondary structure						T			S										G	G	G	B							T	T		B	G	G	G	G	G	G	S																							T	T	S														S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	F	R	H	S	A	Q	Q	M	G	V	T	A	G	L	T	L	P	I	F	D	S	G	R	L	N	A	N	L	D	I	A	K	A	E	S	N	L	S	I	A	S	Y	N	K	A	V	V	E	A	V	N	D	V	A	R	A	A	S	Q	V	Q	T	L	A	E	K	N	Q	H	Q	A	Q	I	E	R	D	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	F	N	A	S	S	G	M	W	N	F	I	P	K	I	E	I	P	I	F	N	A	G	R	N	Q	A	N	L	D	I	A	E	I	R	Q	Q	Q	S	V	V	N	Y	E	Q	K	I	Q	N	A	F	K	E	V	A	D	A	L	A	L	R	Q	S	L	N	D	Q	I	S	A	Q	Q	R	Y	L	A	S	L	Q
Template Known Secondary structure		T	S	S		T	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	V	G	L	A	Q	A	R	F	N	A	G	I	I	A	G	S	R	V	S	E	A	R	I	P	A	L	R	E	R	A	N	G	L	L	L	Q	G	Q	W	L	D	A	S	I	Q	L	T	G	A	L	G	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	L	Q	R	A	R	A	L	Y	Q	H	G	A	V	S	Y	L	E	V	L	D	A	E	R	S	L	F	A	T	R	Q	T	L	L	D	L	N	Y	A	R	Q	V	N	E	I	S	L	Y	T	A	L	G	G	G
Template Known Secondary structure													T	T	S	S		T																																			T	T
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440