Return to main results Retrieve Phyre Job Id

Job DescriptionP33369
Confidence12.33%DateThu Jan 5 11:52:09 GMT 2012
Rank13Aligned Residues54
% Identity17%Templatec2l06A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:phycobilisome lcm core-membrane linker polypeptide; PDBTitle: solution nmr structure of the pbs linker polypeptide domain (fragment2 254-400) of phycobilisome linker protein apce from synechocystis sp.3 pcc 6803. northeast structural genomics consortium target sgr209c
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   216...220.........230.........240.........250.........260.........
Predicted Secondary structure 






Query SS confidence 





















































Query Sequence  IATDRQLYQNGITSSVEGVETDINASKTRQQLNDVAGKMKIIEARLSALTNNQT
Query Conservation            
     
   
          
         
   
  


   
Alig confidence 





















































Template Conservation     







 







 



  

  
     
 
 


  





 
Template Sequence  ISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRALELAFRHILGRGP
Template Known Secondary structure  T
S
TSTTTTS
TSS

Template Predicted Secondary structure 















Template SS confidence 





















































   4950.........60.........70.........80.........90.........100..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions