Job Description P33369 Confidence 100.00% Date Thu Jan 5 11:52:09 GMT 2012 Rank 3 Aligned Residues 411 % Identity 27% Template c1yc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein; PDBTitle: the crystal structure of the outer membrane protein vcec from the2 bacterial pathogen vibrio cholerae at 1.8 resolution Resolution 1.80 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	T	X	Q	W	W	L	E	Y	H	D	N	Q	L	T	S	L	I	N	N	A	L	Q	N	A	P	D	M	Q	V	A	E	Q	R	I	Q	L	A	E	A	Q	A	K	A	V	A	T	Q	D	G	P	Q	I	D	F	S	A	D	M	E	R	Q	K	M	S	A	E	G	L	M	G	P	F	A	L	N	D	P	A
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.
Template Sequence		W	P	S	A	N	W	W	Q	R	Y	Q	D	A	Q	L	N	H	L	I	E	E	A	L	Q	H	S	P	S	L	C	M	A	M	A	R	L	K	G	A	Q	G	F	A	R	Q	A	G	A	I	R	S	F	D	L	G	L	A	A	S	A	T	E	S	K	V	S	E	.	.	.	.	.	.	.	.	.	R	Y	Q	S
Template Known Secondary structure					T	T	G	G	G	G	G															S																							G	G	G	S																S	.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.										130	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	T	T	G	P	W	Y	T	N	G	T	F	G	L	T	A	G	W	H	L	D	I	W	G	K	N	R	A	E	V	T	A	R	L	G	T	V	K	A	R	A	A	E	R	E	Q	T	R	Q	L	L	A	G	S	V	A	R	L	Y	W	E	W	Q	T	Q	A	A	L	N	T	V	L	Q	Q	I	E	K	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	P	P	D	G	W	N	D	Y	G	T	L	T	L	N	F	Q	Y	D	F	D	F	W	G	K	N	R	A	A	V	V	A	A	T	S	E	L	A	A	A	E	A	E	S	V	A	A	R	L	M	I	S	T	S	I	A	N	A	Y	A	E	L	A	R	L	Y	A	N	Q	E	T	V	H	A	A	L	Q	V	R
Template Known Secondary structure		S	S				S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	I	I	A	T	D	R	Q	L	Y	Q	N	G	I	T	S	S	V	E	G	V	E	T	D	I	N	A	S	K	T	R	Q	Q	L	N	D	V	A	G	K	M	K	I	I	E	A	R	L	S	A	L	T	N	N	Q	T	K	S	L	K	L	K	P	V	A	L	P	K	V	A	S	Q	L	P	D	E	L	G	Y
Query Conservation
Alig confidence																																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		N	K	T	V	E	L	L	E	K	R	Y	A	N	G	L	E	T	L	G	S	V	S	Q	A	K	A	V	A	A	S	V	E	A	E	L	L	G	I	Q	E	S	I	Q	L	Q	K	N	A	L	A	A	L	V	G	Q	G	P	D	R	A	A	S	I	E	E	P	H	I	T	L	T	S	R	Y	V	G	L	.	.	.
Template Known Secondary structure														T	T	S	S																																					T	T			G	G	G	G	G	G														G	G	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	L	A	R	R	A	D	L	Q	A	A	H	W	Y	V	E	S	S	L	S	T	I	D	A	A	K	A	A	F	Y	P	D	I	N	L	M	A	F	L	Q	Q	D	A	L	H	L	S	D	L	F	R	H	S	A	Q	Q	M	G	V	T	A	G	L	T	L	P	I	F	D	S	G	R	L	N	A	N	L	D	I
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	L	G	H	R	A	D	I	T	A	A	R	W	R	A	E	A	A	A	Q	Q	V	G	I	A	Q	A	Q	F	Y	P	D	V	T	L	S	A	F	I	G	Y	Q	A	F	G	L	D	H	L	F	D	S	G	N	D	A	G	A	I	G	P	A	I	Y	L	P	L	F	T	G	G	R	L	E	G	Q	L	T	S
Template Known Secondary structure		.	.	G	T	T																								T	T	S															S	G	G	G	T	T	S	T	T																	T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	E	S	N	L	S	I	A	S	Y	N	K	A	V	V	E	A	V	N	D	V	A	R	A	A	S	Q	V	Q	T	L	A	E	K	N	Q	H	Q	A	Q	I	E	R	D	A	L	R	V	V	G	L	A	Q	A	R	F	N	A	G	I	I	A	G	S	R	V	S	E	A	R	I	P	A	L	R	E	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	A	R	Y	Q	E	A	V	A	Q	Y	N	G	T	L	V	Q	A	L	H	E	I	A	D	V	V	T	S	S	Q	A	L	Q	A	R	I	N	K	T	E	Q	A	V	Q	Q	A	E	Q	A	L	H	I	A	T	N	R	Y	Q	G	G	L	A	T	Y	L	D	V	L	V	A	E	E	S	L	L	N	N	Q	R
Template Known Secondary structure																																																												T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	L	L	L	Q	G	Q	W	L	D	A	S	I	Q	L	T	G	A	L	G	G	G	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	V	N	L	Q	S	R	A	F	S	L	D	L	A	L	I	H	A	L	G	G	G	F	E
Template Known Secondary structure																						T
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480