Job Description Q47156 Confidence 4.64% Date Thu Jan 5 12:36:32 GMT 2012 Rank 63 Aligned Residues 80 % Identity 14% Template c1l6nA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein Resolution UNK

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	V	N	I	T	E	L	R	K	N	P	A	K	Y	F	I	D	Q	P	V	A	V	L	S	N	N	R	P	A	G	Y	L	L	S	A	S	A	F	E	A	L	M	D	M	L	A	E	Q	E	E	K	K	P	I	K	A	R	F	R	P	S	A	A	R	L	E	E	I	T	R	R	A	E	Q	Y	L	N	D	M
Query Conservation
Alig confidence																																																														.	.
Template Conservation																																																														.	.
Template Sequence		K	A	Q	Q	A	A	A	D	T	G	N	N	S	Q	V	S	Q	N	Y	P	I	V	Q	N	L	Q	G	Q	M	V	H	Q	A	I	S	P	R	T	L	N	A	W	V	K	V	V	E	E	K	A	F	S	P	E	V	I	P	M	F	S	.	.	A	L	S	E	G	A	T	P	Q	D	L	N	T	M	L	N	T	V
Template Known Secondary structure									T			S	S																S																						S	S	S	T	T	T						.	.			T	T	T
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		88	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		192	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions