 |
Job Description | P0AB01 | Confidence | 23.05% | Date | Thu Jan 5 11:14:15 GMT 2012 |
Rank | 161 | Aligned Residues | 74 |
% Identity | 9% | Template | c1vbkA_ |
PDB info |
PDB header:structural genomics, unknown function | Chain: A: PDB Molecule:hypothetical protein ph1313; |
PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3
|
Resolution | 1.90 Å |
|
 |
  |   |
123 | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
|
|
. | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | I | F | T | G | G | V | A | K | T | N | T | V | S | T | A | E | V | G | A | R | V | A | Q | S | L | G | V | P | R | E | Q | I | I | T | L | D | L | P | K | D | T | E | E | E | A | A | A | V | K | Q | A | I | . |
. |
. |
G | D | A | P | F | L | L | V | T | S | A | S | H | L | P | R | A | M | I | F | F | Q | Q |
Query Conservation |   |
  |
|
|   |
|
|
|   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |   |
|   |   |   |
|
|
|   |   |   |
|   |   |
|   |   |
|   |
|
|   |
|
|
|   |   |
|   |   |   |
| . | . | . |   |   |   |   |
|   |
|
|
|
|
|   |
|
|   |
|
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . | . |
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
| . | . | . | . | . | . |
| . | . |
|
|
|
|
|   |   |   |   |
|
|
|   |   |
|   |   |
|   |
| . |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
Template Sequence |   |
I | G | I | L | H | D | E | . |
. |
. |
. |
. |
. |
L | . |
. |
S | A | L | A | I | F | L | M | M | K | R | G | V | E | V | I | P | V | Y | I | . |
G | K | D | D | K | N | L | E | K | V | R | S | L | W | N | L | L | K | R | Y | S | Y | G | S | K | G | F | L | V | V | A | E | S | F | D | R | V | L | K | L | I | R | D |
Template Known Secondary structure |   |
 |  |  |
| S | S |  | . | . | . | . | . | . |  | . | . |  |  |  |  |  |  |  |  |  |  | B | T |
|  |  |  |  |  |  |  | . | S |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| T | T | S |
|
|
|
|  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
| . | . | . | . | . | . |
| . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
183 | . | . | . | . | . | . | |
|
|
|
|
|
190 | |
|
. | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | |
. | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . |
  |
  |   |
200 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
Query Sequence |   |
E | G | L | N | P | L |
Query Conservation |   |
  |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
Template Sequence |   |
F | G | V | K | G | V |
Template Known Secondary structure |   |
 | T |
|
|  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
  |   |
254 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|