Job Description P0A9P4 Confidence 99.65% Date Thu Jan 5 11:10:53 GMT 2012 Rank 124 Aligned Residues 310 % Identity 13% Template c2gqfA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0933; PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	T	K	H	S	K	L	L	I	L	G	S	G	P	A	G	Y	T	A	A	V	Y	A	A	R	A	N	L	Q	P	V	L	I	T	G	M	E	K	G	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	T	T	T	E	V	E	N	W	P	G	D	P	N	D	L	T	G	P	L	L	M
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	S	Q	Y	S	E	N	I	I	I	G	A	G	A	A	G	L	F	C	A	A	Q	L	A	K	L	G	K	S	V	T	V	F	D	N	G	K	K	I	G	R	K	I	L	X	S	G	G	G	F	C	N	F	T	N	L	E	V	T	P	A	H	Y	L	S	Q	N	P	H	F	V	K	S	A	L	A	R	Y	T	N
Template Known Secondary structure							S							S													T	T								S	S	S	S	S							G	G	G	G	T						S	S			G	G	G				S		T	T	S	T							S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		E	R	M	H	E	H	A	T	K	F	E	T	E	I	I	F	D	H	I	N	K	V	D	L	Q	N	R	P	F	R	L	N	G	D	N	G	E	Y	T	C	D	A	L	I	I	A	T	G	A	S	A	R	Y	L	G	L	P	S	E	E	A	F	K	G	R	G	V	S	A	C	A	T	C	D	G	F	F	Y	R	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		W	D	F	I	S	L	V	A	E	Q	G	I	T	Y	H	E	K	E	L	G	Q	L	F	C	D	E	G	A	E	Q	I	V	E	X	L	K	S	E	C	D	K	Y	G	A	K	I	L	L	R	S	E	V	S	Q	V	E	R	I	Q	N	D	E	K	V	R	F	V	L	Q	V	N	S	T	Q	W	Q	C	K	N	L
Template Known Secondary structure											T	T							S	T	T					T	T		T															T						S											S		S	S								T	T						S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
				146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	N	Q	K	V	A	V	I	G	G	G	N	T	A	V	E	E	A	L	Y	L	S	N	I	A	S	E	V	H	L	I	H	R	R	D	G	F	R	A	E	K	I	L	I	K	R	L	M	D	K	V	E	N	G	N	I	I	L	H	T	N	R	T	L	E	E	V	T	G	D	Q	M	G	V	T	G	V	R	L
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		I	V	A	T	G	G	L	S	X	P	G	L	G	A	T	P	F	G	Y	Q	I	A	E	Q	F	G	I	P	V	I	P	P	R	A	S	L	V	P	F	T	Y	R	E	T	D	K	F	L	T	A	L	S	G	I	S	L	P	V	T	I	T	A	L	C	G	K	S	F	Y	N	Q	L	L	F	T	H	R	G	I	S
Template Known Secondary structure								S	S		G	G	G	T			S									T	T										S							G	G	G	G	G	G	G	G	G	T	T										T	T	S											S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	T	Q	N	S	D	N	I	E	S	L	D	V	A	G	L	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	A	V	L	Q	I	S	N	Y	W	Q	P	T	E	S	V	E	I	D	L	L	P	N	H	N	V	E	E	E	I	N	Q	A	K	Q	S	S	P	K	Q	X	L	K	T	I	L	V	R	L	L	P	K	K	L	V	E	L	W	I	E	Q	G	I	V	Q	D	E	V	I	A	N	I	S	K	V	R	V	K	N
Template Known Secondary structure		S							T	T	T			T	T							S		S	S	S														T	T	S	B						T	T	T	S											T	T	S	S				B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
								243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.					.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																						.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																						.	.	.	.
Query Sequence		.	.	.	.	.	.	A	I	G	H	S	P	N	T	A	I	F	E	G	Q	L	E	L	E	N	G	Y	I	K	V	Q	S	G	I	H	G	N	A	T	Q	T	S	I	P	G	V	F	A	A	G	D	V	M	D	H	I	Y	R	Q	.	.	.	.	A	I	T	S	A	G	T	G	C	M	A	A	L	D	A	E	R
Query Conservation		.	.	.	.	.	.																																																						.	.	.	.
Alig confidence		.	.	.	.	.	.																																																						.	.	.	.
Template Conservation
Template Sequence		L	V	D	F	I	H	H	W	E	F	T	P	N	G	T	E	G	Y	R	T	A	E	V	T	X	G	G	V	D	T	K	V	I	S	S	K	T	X	E	S	N	Q	V	S	G	L	Y	F	I	G	E	V	L	D	V	T	G	W	L	G	G	Y	N	F	Q	W	A	W	S	S	A	Y	A	C	A	L	S	I	S	R
Template Known Secondary structure														S					T	T	T		S								G	G	G	B		T	T	T		B	B	S	S	S	T	T					G	G	G	B	S					T	T	T																			T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions