Phyre 2 alignment of P0A9P4 with c1yqzA

Job Description P0A9P4
Confidence 99.96% Date Thu Jan 5 11:10:53 GMT 2012

Rank 56 Aligned Residues 286

% Identity 20% Template c1yqzA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution

Resolution 1.54 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence	K	L	L	I	L	G	S	G	P	A	G	Y	T	A	A	V	Y	A	A	R	A	.	.	N	L	Q	P	V	L	I	T	G	M	E	K	G	G	Q	L	T	T	T	T	E	V	E	N	W	P	G	D	P	N	D	L	T	G	P	L	L	M	E	R	M	H	E	H	A	T	K	F	E	T	E	I	I	F	D	H	I
Query Conservation																						.	.
Alig confidence																						.	.																.	.
Template Conservation																																							.	.
Template Sequence	K	I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	.	.	A	N	C	A	L	P	Y	V	I	G	E	V	V	E	D	R	R	Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T	V	K	T	Y	H	E
Template Known Secondary structure								S	T	T													S	S	S							S	S	S		S	S	B	.	.		G	G	G						T	T	S	S			G	G	G	G	B																		T
Template Predicted Secondary structure																																							.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																																									.	.
Query SS confidence																		.	.	.	.	.																																									.	.
Query Sequence	N	K	V	D	L	Q	N	R	P	F	R	L	N	G	D	N	G	.	.	.	.	.	E	Y	T	C	D	A	L	I	I	A	T	G	A	S	A	R	Y	L	G	L	P	S	E	E	A	F	K	G	R	G	V	S	A	C	A	T	C	D	G	F	.	.	F	Y	R	N	Q	K	V	A	V	I	G	G	G	N	T	A
Query Conservation																		.	.	.	.	.																																									.	.
Alig confidence																		.	.	.	.	.																																									.	.
Template Conservation
Template Sequence	V	I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	N	L	E	D	T	D	A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V	G	A	G	Y	V	S
Template Known Secondary structure						T	T	T	T							T	T	T	T								S																		T	T					S	S															T										S
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence	V	E	E	A	L	Y	L	S	N	I	A	S	E	V	H	L	I	H	R	R	D	G	F	R	A	E	.	.	K	I	L	I	K	R	L	M	D	K	V	E	N	G	N	I	I	L	H	T	N	R	T	L	E	E	V	T	G	D	Q	M	G	V	T	G	V	R	L	R	D	T	Q	N	S	D	N	I	E	S	L	D
Query Conservation																											.	.
Alig confidence																											.	.																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	E	V	L	E	N	L	Y	E	R	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	L	M	D	A	D	M	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G	N	.	.	.	.	.	.	.	.	.	.	.	E	I	T	F	K	S	G	K	V	E	H
Template Known Secondary structure											T								S	S	S			S	T	T	S		G	G	G	G										T	T						S								T	T	.	.	.	.	.	.	.	.	.	.	.					T	T	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.												.	220	.	.	.	.	.	.	.	.	.

	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.										.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																				.						.																																.	.	.	.	.	.	.	.	.
Query SS confidence																				.						.																																.	.	.	.	.	.	.	.	.
Query Sequence	V	A	G	L	F	V	A	I	G	H	S	P	N	T	A	I	F	E	G	.	Q	L	E	L	E	.	N	G	Y	I	K	V	Q	S	G	I	H	G	N	A	T	Q	T	S	I	P	G	V	F	A	A	G	D	V	M	D	H	.	.	.	.	.	.	.	.	.	I	Y	R	Q	A	I	T	S	A	G	T	G	C	M
Query Conservation																				.						.																																.	.	.	.	.	.	.	.	.
Alig confidence																				.						.								.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.
Template Sequence	Y	D	M	I	I	E	G	V	G	T	H	P	N	S	K	F	I	E	S	S	N	I	K	L	D	R	K	G	F	I	P	V	N	.	.	.	.	.	D	K	F	E	T	N	V	P	N	I	Y	A	I	G	D	I	A	T	S	H	Y	R	H	V	D	L	P	A	S	V	P	L	A	W	G	A	H	R	A	A	S	I
Template Known Secondary structure		S											S		G	G	G	T	T	S	S					T	T	S						.	.	.	.	.	T	T		B		S	S	T	T					G	G	G					B	S	S	S	S	S						S
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.						.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

	306	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	A	L	D	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	A	E	Q	I	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	305	.	.	.	.	310

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions