Phyre 2 alignment of P0A9P4 with c1nhqA

Job Description P0A9P4
Confidence 99.95% Date Thu Jan 5 11:10:53 GMT 2012

Rank 63 Aligned Residues 287

% Identity 24% Template c1nhqA_

PDB info PDB header:oxidoreductase (h2o2(a)) Chain: A: PDB Molecule:nadh peroxidase; PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence	K	L	L	I	L	G	S	G	P	A	G	Y	T	A	A	V	Y	A	A	R	A	.	.	N	L	Q	P	V	L	I	T	G	M	E	K	G	G	Q	L	T	T	T	T	E	V	E	N	W	P	G	D	P	N	D	L	T	G	P	L	L	M	E	R	M	H	E	H	A	T	K	F	E	T	E	I	I	F	D	H	I
Query Conservation																						.	.
Alig confidence																						.	.																.	.	.
Template Conservation																																							.	.	.
Template Sequence	K	V	I	V	L	G	S	S	H	G	G	Y	E	A	V	E	E	L	L	N	L	H	P	D	A	E	I	Q	W	Y	E	K	G	D	F	I	S	F	.	.	.	L	S	S	G	M	Q	L	Y	L	E	G	K	V	K	D	V	N	S	V	R	Y	M	T	G	E	K	M	E	S	R	G	V	N	V	F	S	N	T	E
Template Known Secondary structure							S	S															T	T	S							S	S	S	S	S	S	B	.	.	.		G	G	G						T	T	S	S			G	G	G	S	B	S									T	T						T
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.

	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																																									.	.	.	.	.
Query SS confidence																		.	.	.	.	.																																									.	.	.	.	.
Query Sequence	N	K	V	D	L	Q	N	R	P	F	R	L	N	G	D	N	G	.	.	.	.	.	E	Y	T	C	D	A	L	I	I	A	T	G	A	S	A	R	Y	L	G	L	P	S	E	E	A	F	K	G	R	G	V	S	A	C	A	T	C	D	G	F	.	.	.	.	.	F	Y	R	N	Q	K	V	A	V	I	G	G	G
Query Conservation																		.	.	.	.	.																																									.	.	.	.	.
Alig confidence																		.	.	.	.	.																																									.	.	.	.	.
Template Conservation
Template Sequence	I	T	A	I	Q	P	K	E	H	Q	V	T	V	K	D	L	V	S	G	E	E	R	V	E	N	Y	D	K	L	I	I	S	P	G	A	V	P	F	E	L	D	I	P	G	K	D	L	D	N	I	Y	L	M	R	G	R	Q	W	A	I	K	L	K	Q	K	T	V	D	P	E	V	N	N	V	V	V	I	G	S	G
Template Known Secondary structure						T	T	T	T							T	T	T									S															S	T	T	T	T		B	T					S													T		T	T										S
Template Predicted Secondary structure
Template SS confidence
	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

	156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence	N	T	A	V	E	E	A	L	Y	L	S	N	I	A	S	E	V	H	L	I	H	R	R	D	G	.	.	.	F	R	A	E	K	I	L	I	K	R	L	M	D	K	V	E	N	G	N	I	I	L	H	T	N	R	T	L	E	E	V	T	G	D	Q	M	G	V	T	G	V	R	L	R	D	T	Q	N	S	D	N	I
Query Conservation																										.	.	.
Alig confidence																										.	.	.																																											.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.
Template Sequence	Y	I	G	I	E	A	A	E	A	F	A	K	A	G	K	K	V	T	V	I	D	I	L	D	R	P	L	G	V	Y	L	D	K	E	F	T	D	V	L	T	E	E	M	E	A	N	N	I	T	I	A	T	G	E	T	V	E	R	Y	E	G	D	G	R	V	Q	K	V	V	T	.	.	.	.	.	.	.	.	D	K
Template Known Secondary structure													T	T								S	S	S	S	T	T	T	T	T																T	T						S									S	S	B							.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.
Template SS confidence
	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.									.	230

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.										.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																													.																																	.	.	.	.	.	.	.	.	.
Query SS confidence																													.																																	.	.	.	.	.	.	.	.	.
Query Sequence	E	S	L	D	V	A	G	L	F	V	A	I	G	H	S	P	N	T	A	I	F	E	G	Q	L	E	L	E	.	N	G	Y	I	K	V	Q	S	G	I	H	G	N	A	T	Q	T	S	I	P	G	V	F	A	A	G	D	V	M	D	H	I	.	.	.	.	.	.	.	.	.	Y	R	Q	A	I	T	S	A	G	T
Query Conservation																													.																																	.	.	.	.	.	.	.	.	.
Alig confidence																													.								.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence	N	A	Y	D	A	D	L	V	V	V	A	V	G	V	R	P	N	T	A	W	L	K	G	T	L	E	L	H	P	N	G	L	I	K	T	D	.	.	.	.	.	E	Y	M	R	T	S	E	P	D	V	F	A	V	G	D	A	T	L	I	K	Y	N	P	A	D	T	E	V	N	I	A	L	A	T	N	A	R	K	Q
Template Known Secondary structure						S						S					S		G	G	G	T	T	T	S		B		T	T	S		B				.	.	.	.	.	T	T		B		S	S	T	T					G	G	G	B					G	G	G	T
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
	231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.						.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

	303	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence	G	C	M	A	A	L	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	R	F	A	V	K	N	L
Template Known Secondary structure							T	S
Template Predicted Secondary structure
Template SS confidence
	306	.	.	.	310	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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