Job Description P0A9P4 Confidence 99.95% Date Thu Jan 5 11:10:53 GMT 2012 Rank 61 Aligned Residues 293 % Identity 17% Template c1m6iA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programmed cell death protein 8; PDBTitle: crystal structure of apoptosis inducing factor (aif) Resolution 1.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.																			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																												.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	H	S	K	L	L	I	L	G	S	G	P	A	G	Y	T	A	A	V	Y	A	A	R	A	N	L	.	.	Q	P	V	L	I	T	G	M	E	K	G	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	T	T	T	E	V	E	N	W	P	G	D	P	N	D	L	T	G	P	L
Query Conservation																												.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	A	R	V	L	I	V	S	E	D	P	E	L	P	Y	M	R	P	P	L	S	K	E	L	W	F	S	P	N	V	T	K	T	L	R	F	K	Q	W	N	G	K	E	R	S	I	Y	F	Q	P	P	S	F	Y
Template Known Secondary structure		S								S		S														S	T	T								S	S	S	S			B		S	G	G	G	G	T	G	G	G				T										T	T	S					S	B	S	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.
Query Sequence		L	M	E	R	M	H	E	H	A	T	K	F	E	T	E	I	I	F	D	H	I	N	K	V	D	L	Q	N	R	P	F	R	L	N	G	D	N	G	E	Y	T	C	D	A	L	I	I	A	T	G	A	S	A	R	Y	L	G	L	P	S	E	E	.	.	.	.	.	.	.	A	F	K	G	R	G	V	S	A	C	A
Query Conservation																																																																.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	A	Q	D	L	P	H	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	Q	L	D	V	R	D	N	M	V	K	L	N	D	G	S	Q	I	T	Y	E	K	C	L	I	A	T	G	G	T	P	R	S	L	S	A	I	D	R	A	G	A	E	V	K	S	R	T	T	L	F	R	K	I	G	D	F	R
Template Known Secondary structure		B		T	T	T	T	T	T	S	T	T								T								G	G	G	T					T	T	S																								T	S							T						S
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																								.	.	.	.																									.	.	.
Query SS confidence																								.	.	.	.																									.	.	.
Query Sequence		T	C	D	G	F	F	Y	R	N	Q	K	V	A	V	I	G	G	G	N	T	A	V	.	.	.	.	E	E	A	L	Y	L	S	N	I	A	S	E	V	H	L	I	H	R	R	D	G	F	R	A	.	.	.	E	K	I	L	I	K	R	L	M	D	K	V	E	N	G	N	I	I	L	H	T	N	R	T	L	E	E
Query Conservation																								.	.	.	.																									.	.	.
Alig confidence																								.	.	.	.																									.	.	.
Template Conservation
Template Sequence		S	L	E	K	I	S	R	E	V	K	S	I	T	I	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	A	R	A	L	G	T	E	V	I	Q	L	F	P	E	K	G	N	M	G	K	I	L	P	E	Y	L	S	N	W	T	M	E	K	V	R	R	E	G	V	K	V	M	P	N	A	I	V	Q	S
Template Known Secondary structure											S								S																		T								S	S	S	S	T	T	T	T	T	S														T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		V	T	G	D	Q	M	G	V	T	G	V	R	L	R	D	T	Q	N	S	D	N	I	E	S	L	D	V	A	G	L	F	V	A	I	G	H	S	P	N	T	A	I	F	E	G	.	.	.	Q	L	E	L	E	N	G	Y	I	K	V	Q	S	G	I	H	G	N	A	T	Q	T	S	I	P	G	V	F	A	A	G	D
Query Conservation																																															.	.	.
Alig confidence														.	.	.	.	.	.	.																											.	.	.													.	.	.	.	.							.
Template Conservation														.	.	.	.	.	.	.																																										.	.	.	.	.							.
Template Sequence		V	G	V	S	S	G	K	L	L	I	K	L	.	.	.	.	.	.	.	K	D	G	R	K	V	E	T	D	H	I	V	A	A	V	G	L	E	P	N	V	E	L	A	K	T	G	G	L	E	I	D	S	D	F	G	G	F	R	V	N	.	.	.	.	.	A	E	L	Q	A	R	.	S	N	I	W	V	A	G	D
Template Known Secondary structure						T	T							.	.	.	.	.	.	.	T	T	S						S													T	T					T			B		T	T	T		S					.	.	.	.	.	T	T					.	T	T					G	G
Template Predicted Secondary structure														.	.	.	.	.	.	.																																										.	.	.	.	.							.
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.								.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.						.	.	.	.	.	430		.	.	.	.	.	.	.	.
		288	.	290	.	.	.	.									.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.
Query Sequence		V	M	D	H	I	Y	R	.	.	.	.	.	.	.	.	Q	A	I	T	S	A	G	T	G	C	M	A	A	L	D	A
Query Conservation									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	C	F	Y	D	I	K	L	G	R	R	R	V	E	H	H	D	H	A	V	V	S	G	R	L	A	G	E	N	M
Template Known Secondary structure		G						T	T	T
Template Predicted Secondary structure
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions