Job Description P0A9P4 Confidence 100.00% Date Thu Jan 5 11:10:53 GMT 2012 Rank 11 Aligned Residues 303 % Identity 18% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		M	G	T	T	K	H	S	K	L	L	I	L	G	S	G	P	A	G	Y	T	A	A	V	Y	A	A	R	A	N	L	Q	.	P	V	L	I	T	G	M	E	K	G	G	Q	L	T	T	T	T	E	V	E	N	W	P	G	D	P	N	D	L	T	G	P	L	L	M	E	R	M	H	E	H	A	T	K	F	E	T	E
Query Conservation																																	.
Alig confidence																																	.																	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.
Template Sequence		M	P	E	A	Y	S	A	K	I	A	L	L	G	A	G	P	A	S	I	S	C	A	S	F	L	A	R	L	G	Y	S	D	I	T	I	F	E	K	Q	E	Y	V	G	G	L	S	T	S	.	.	.	.	.	.	.	E	I	P	Q	F	R	L	P	Y	D	V	V	N	F	E	I	E	L	M	K	D	L	G	V	K
Template Known Secondary structure		S		G	G	G	G									S														T									S	S	S	S		S	T					.	.	.	.	.	.	.	T	S		T	T	T	S														T	T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.								230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	F	D	H	I	N	K	V	D	L	Q	N	R	P	F	R	L	N	G	D	N	G	E	Y	T	C	D	A	L	I	I	A	T	G	A	S	A	R	Y	L	G	L	P	S	E	E	A	F	K	G	R	G	V	S	A	C	A	T	C	D	G	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.
Template Sequence		I	I	C	G	K	S	L	S	E	N	E	I	T	L	N	T	L	K	E	E	G	.	.	.	.	.	Y	K	A	A	F	I	G	I	G	L	P	E	P	K	T	D	D	I	F	Q	G	L	T	Q	D	Q	G	F	Y	T	S	K	D	F	L	P	L	V	A	K	S	S	K	A	G	M	C	A	C	H	S	P	L	P
Template Known Secondary structure					S			B	S	T	T	S	B								T	T	.	.	.	.	.																	G	G	G	T	T			T	T	T	T																	T	T	T		S	S
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.						.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	N	Q	K	V	A	V	I	G	G	G	N	T	A	V	E	E	A	L	Y	L	S	N	I	A	S	E	V	H	L	I	H	R	R	D	G	F	R	A	E	K	I	L	I	K	R	L	M	D	K	V	E	N	G	N	I	I	L	H	T	N	R	T	L	E	E	V	T	G	D	Q	M	G	V	T	G	V	R	L
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		S	I	R	G	A	V	I	V	L	G	A	G	D	T	A	F	D	C	A	T	S	A	L	R	C	G	A	R	R	V	F	L	V	F	R	K	G	.	F	V	N	I	R	A	V	P	E	E	V	E	L	A	K	E	E	K	C	E	F	L	P	F	L	S	P	R	K	V	I	V	K	G	G	R	I	V	A	V	Q	F
Template Known Secondary structure					S								S													T	T		S							S	S		.	G	G	G			S											T	T						S										S	S	S
Template Predicted Secondary structure																																							.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.										.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.					.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																											.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																											.	.	.	.
Query Sequence		R	D	T	Q	N	S	D	N	I	.	.	.	.	.	.	.	.	.	E	S	L	D	V	A	G	L	F	V	A	I	G	H	S	P	N	T	A	I	F	E	G	Q	L	E	.	.	.	.	L	E	N	G	Y	I	K	V	Q	S	G	I	H	G	N	A	T	Q	T	S	I	P	G	V	F	A	A	G	D	V	M	D
Query Conservation											.	.	.	.	.	.	.	.	.																											.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																											.	.	.	.											.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		V	R	T	E	Q	D	E	T	G	K	W	N	E	D	E	D	Q	I	V	H	L	K	A	D	V	V	I	S	A	F	G	S	V	L	R	D	P	K	V	K	E	A	L	S	P	I	K	F	N	R	W	D	L	P	E	V	D	P	.	.	.	.	E	T	M	Q	T	S	E	P	W	V	F	A	G	G	D	I	V	G
Template Known Secondary structure								S	S	S															S																		T	T	T	T	S		B		T	T	S	S	B				T	.	.	.	.	T	T		B		S	S	T	T					G	G	G	G	T
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.					.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	Y	R	Q	A	I	T	S	A	G	T	G	C	M	A	A	L	D	A	E	R	Y	L	D	G	L	A	D	A	K
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		M	A	.	N	T	T	V	E	S	V	N	D	G	K	Q	A	S	W	Y	I	H	K	Y	I	Q	A	Q	Y	G	A	S
Template Known Secondary structure				.		S																							T	T
Template Predicted Secondary structure				.
Template SS confidence
		485	.		.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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