Phyre 2 alignment of P0A9P4 with c1fcdB

Job Description P0A9P4
Confidence 99.93% Date Thu Jan 5 11:10:53 GMT 2012

Rank 73 Aligned Residues 296

% Identity 16% Template c1fcdB_

PDB info PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution

Resolution 2.53 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence	K	L	L	I	L	G	S	G	P	A	G	Y	T	A	A	V	Y	A	A	R	A	N	.	.	L	Q	P	V	L	I	T	G	M	E	K	G	G	Q	L	T	T	T	T	E	V	E	N	W	P	G	D	P	N	D	L	T	G	P	L	L	M	E	R	M	H	E	H	A	T	K	F	E	T	E	I	I	F	D	H	I
Query Conservation																							.	.
Alig confidence																							.	.												.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.
Template Sequence	K	V	V	V	V	G	G	G	T	G	G	A	T	A	A	K	Y	I	K	L	A	D	P	S	I	E	V	T	L	I	E	P	N	T	D	.	.	.	.	.	.	Y	Y	T	C	Y	L	S	N	E	V	I	G	G	D	R	K	L	E	S	I	K	H	G	Y	D	G	L	R	A	H	G	I	Q	V	V	H	D	S	A
Template Known Secondary structure								S	T	T										T	T		T	T	S							S		S	S	.	.	.	.	.	.				S	T	T	T						T	S	S		G	G	G	G				S						T	T						S
Template Predicted Secondary structure																																				.	.	.	.	.	.
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.							.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	N	K	V	D	L	Q	N	R	P	F	R	L	N	G	D	N	G	E	Y	T	C	D	A	L	I	I	A	T	G	A	S	A	R	Y	L	G	L	P	S	E	E	A	F	K	G	R	G	V	S	A	C	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	D	G	F	F	Y	R	N	Q	K	V
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence	T	G	I	D	P	D	K	K	L	V	K	.	T	A	G	G	A	E	F	G	Y	D	R	C	V	V	A	P	G	I	E	L	I	Y	D	K	I	E	G	Y	S	E	E	A	A	A	K	L	P	H	A	W	K	A	G	E	Q	T	A	I	L	R	K	Q	L	E	D	M	A	D	G	G	T	V	V	I	A	P	P	A
Template Known Secondary structure						T	T	T				.			T	S						S													T	T	S	T	T			T	T	G	G	G	T	S					S														S	S		T	T
Template Predicted Secondary structure												.
Template SS confidence
	78	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.																										.	.	.	.
Query SS confidence																					.	.	.	.	.	.																										.	.	.	.
Query Sequence	A	V	I	G	G	G	N	T	A	V	E	E	A	L	Y	L	S	N	I	A	.	.	.	.	.	.	S	E	V	H	L	I	H	R	R	D	G	F	R	A	E	K	I	L	I	K	R	L	M	D	K	.	.	.	.	V	E	N	G	N	I	I	L	H	T	N	R	T	L	E	E	V	T	G	D	Q	M	G	V	T
Query Conservation																					.	.	.	.	.	.																										.	.	.	.
Alig confidence																					.	.	.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence	A	P	F	R	C	P	P	G	P	Y	E	R	A	S	Q	V	A	Y	Y	L	K	A	H	K	P	M	S	K	V	I	I	L	D	S	S	Q	T	F	S	K	Q	S	Q	F	S	K	G	W	E	R	L	Y	G	F	G	T	E	N	A	M	I	E	W	H	P	G	P	D	S	A	V	V	K	V	D	G	G	E	M	M
Template Known Secondary structure	S	S		B		T	T																		T	T								S		S	S		T	T														T	T	T	T	T		S						T	T	T	T				S				T	T	T
Template Predicted Secondary structure
Template SS confidence
	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.
Predicted Secondary structure																																																										.																	.	.
Query SS confidence																																																										.																	.	.
Query Sequence	G	V	R	L	R	D	T	Q	N	S	D	N	I	E	S	L	D	V	A	G	L	F	V	A	I	G	H	S	P	N	T	A	I	F	E	G	Q	L	E	L	E	N	G	Y	I	K	V	Q	S	G	I	H	G	N	A	T	Q	.	T	S	I	P	G	V	F	A	A	G	D	V	M	D	H	I	.	.	Y	R	Q	A
Query Conservation																																																										.																	.	.
Alig confidence				.	.	.	.	.	.	.																																								.	.	.	.					.																	.	.
Template Conservation				.	.	.	.	.	.	.																																								.	.	.	.
Template Sequence	V	E	T	.	.	.	.	.	.	.	A	F	G	D	E	F	K	A	D	V	I	N	L	I	P	P	Q	R	A	G	K	I	A	Q	I	A	G	L	T	N	D	A	G	W	C	P	V	D	I	.	.	.	.	K	T	F	E	S	S	I	H	K	G	I	H	V	I	G	D	A	S	I	A	N	P	M	P	K	S	G
Template Known Secondary structure				.	.	.	.	.	.	.	T	T							S																		T			B	T	T	T	B	B		B		S	.	.	.	.	S	S		B	B	S	S	S	T	T					G	G	G	B			S	S	S		B	S
Template Predicted Secondary structure				.	.	.	.	.	.	.																																								.	.	.	.
Template SS confidence
	237	.	.								240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.					.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	T	S	A	G	T	G	C	M	A	A	L	D	A	E	R	Y	L	D	G	L	A	D	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Y	S	A	N	S	Q	G	K	V	A	A	A	A	V	V	V	L	L	K	G	E	E	P	G	T
Template Known Secondary structure																			T	T
Template Predicted Secondary structure
Template SS confidence
	306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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