Job Description P54746 Confidence 98.14% Date Thu Jan 5 12:06:04 GMT 2012 Rank 20 Aligned Residues 242 % Identity 12% Template c3qbuD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori Resolution 2.57 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		M	H	W	D	R	E	W	Y	F	T	T	E	E	S	R	I	L	L	V	N	N	M	E	E	I	L	C	R	L	E	Q	D	N	E	Y	K	Y	Y	V	L	D	G	Q	T	A	I	L	E	D	Y	F	A	V	K	P	E	N	K	D	R	V	K	K	Q	V	E	A	G	K	L	I	I	G	P	.	W	Y	T	Q	T
Query Conservation																																																																												.
Alig confidence																																												.	.	.	.	.	.								.	.	.												.					.
Template Conservation																																												.	.	.	.	.	.								.	.	.												.
Template Sequence		S	Y	G	G	E	D	S	P	D	D	I	S	R	G	L	F	A	G	E	V	G	I	P	R	L	L	K	L	F	K	K	Y	H	L	P	A	T	W	F	V	P	G	.	.	.	.	.	.	H	S	I	E	T	F	P	.	.	.	E	Q	M	K	M	I	V	D	A	G	H	.	E	V	G	A	H	G	Y	S	H	E
Template Known Secondary structure		T	S	S		T	T														T												T	T										.	.	.	.	.	.								.	.	.								T	T	T		.				B			S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.								.	.	.												.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	T	T	I	V	S	A	E	S	I	V	R	N	L	M	Y	G	M	R	D	C	L	A	F	G	E	P	M	K	I	G	Y	L	P	D	S	F	G	M	S	G	Q	L	P	H	I	Y	N	G	F	G	I	T	R	T	M	F	W	R	G	C	S	E	R	H	G	T	D	K	T	E	F	L	W	Q	S	S	D	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		N	P	I	A	M	S	T	K	Q	E	E	D	V	L	L	K	S	V	E	L	I	K	D	L	T	G	K	A	P	T	G	Y	V	A	P	W	W	E	F	S	N	I	T	N	E	L	L	L	K	H	G	F	K	Y	D	H	S	L	M	H	N	D	F	T	P	Y	Y	V	R	V	G	D	S	W	S	K	I	D	Y	S
Template Known Secondary structure			G	G	G	S																					S	S								G	G	G			S	S								T	T	T									S		S	S	S									B						T	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
														170	.	.	.	.	.	.	.	.	.	180	.														.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	S	E	V	T	A	Q	V	L	P	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	I	G	K	Y	L	P	A	D	E	N	G	L	R	K	R	L	D	S	Y	F	D	V	L	E	K	A	S	V	T	K	E	I	L	L	P	N	G	H	D	Q	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	A	K	D	W	M	K	P	L	I	R	G	V	E	T	N	L	V	E	I	P	A	N	W	Y	L	D	D	L	P	P	M	M	F	I	K	K	S	P	N	S	F	G	F	V	S	P	R	D	I	G	Q	M	W	I	D	Q	F	D	W	V	Y	R	E	M	D	Y	A	V	F	S	M	T	I	H	P	D	V	S
Template Known Secondary structure		S		G	G	G	T					B														G	G	G	B	S								T	T		T	T					S																					S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	Q	Q	N	I	F	E	V	M	D	K	L	R	E	I	Y	P	Q	R	K	F	V	M	S	R	F	E	E	V	F	E	K	I	E	A	Q	R	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	P	Q	V	L	L	M	H	E	K	I	I	E	H	I	N	K	H	E	G	V	R	W	V	T	F	N	E	I	A	D	D	F	L	K	R	N	P	R
Template Known Secondary structure		T	S															T	T	S	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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