Job Description P54746 Confidence 100.00% Date Thu Jan 5 12:06:04 GMT 2012 Rank 2 Aligned Residues 789 % Identity 27% Template c3lvtA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase, family 38; PDBTitle: the crystal structure of a protein in the glycosyl hydrolase2 family 38 from enterococcus faecalis to 2.55a Resolution 2.55 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	S	R	V	H	I	T	P	H	M	H	W	D	R	E	W	Y	F	T	T	E	E	S	R	I	L	L	V	N	N	M	E	E	I	L	C	R	L	E	Q	D	N	E	Y	K	Y	Y	V	L	D	G	Q	T	A	I	L	E	D	Y	F	A	V	K	P	E	N	K	D	R	V	K	K	Q	V	E	A	G	K
Query Conservation
Alig confidence															.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		X	T	K	K	K	V	Y	I	V	S	H	S	H	.	.	.	.	W	Y	L	P	Y	E	E	H	H	X	R	L	I	E	L	V	D	N	V	L	D	L	I	E	N	D	P	E	F	N	S	F	H	L	D	G	Q	T	I	I	L	D	D	Y	L	Q	V	R	P	E	K	K	E	A	V	K	K	A	V	Q	A	G	K
Template Known Secondary structure															.	.	.	.																											T	T							T	T	B	T											G	G	G										T	T	S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	I	G	P	W	Y	T	Q	T	D	T	T	I	V	S	A	E	S	I	V	R	N	L	M	Y	G	M	R	D	C	L	A	F	G	E	P	M	K	I	G	Y	L	P	D	S	F	G	M	S	G	Q	L	P	H	I	Y	N	G	F	G	I	T	R	T	M	F	W	R	G	C	S	E	R	H	G	T	D	K	T
Query Conservation
Alig confidence																																																			.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	I	G	P	F	Y	I	L	Q	D	D	F	L	I	S	S	E	S	N	V	R	N	X	L	I	G	H	L	E	S	Q	K	W	G	A	P	V	Q	L	G	Y	F	P	D	T	X	G	Q	.	.	.	T	P	Q	X	X	Q	L	A	N	L	P	A	A	A	F	G	S	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	B	S	S				G	G	G	S																				T									S				T	T	.	.	.							T	T	T									.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	L	W	Q	S	S	D	G	S	E	V	T	A	Q	V	L	P	L	G	Y	A	I	G	K	Y	L	P	A	D	E	N	G	L	R	K	R	L	D	S	Y	F	D	V	L	E	K	A	S	V	T	K	E	I	L	L	P	N	G	H	D	Q	M	P	L	Q	Q	N	I	F	E	V	M	D	K	L	R	E	I	Y
Query Conservation
Alig confidence																										.	.	.	.																																		.	.	.	.	.	.
Template Conservation																										.	.	.	.																																		.	.	.	.	.	.
Template Sequence		E	X	W	W	E	G	P	D	Q	T	K	I	F	G	L	L	F	A	N	W	N	E	I	P	.	.	.	.	S	E	K	E	A	A	I	A	F	W	K	Q	K	L	A	D	V	E	R	Y	A	S	T	N	H	L	L	X	X	N	G	V	D	.	.	.	.	.	.	D	I	T	K	A	I	A	L	A	N	E	L	F
Template Known Secondary structure								T	T	S														S		.	.	.	.	S	S																				S	S	S										.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.																																		.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	R	K	F	V	M	S	R	F	E	E	V	F	E	K	I	E	A	Q	R	D	N	L	A	T	L	K	G	E	F	I	D	G	K	Y	M	R	V	H	R	T	I	G	S	T	R	M	D	I	K	I	A	H	A	R	I	E	N	K	I	V	N	L	L	E	P	L	A	T	L	A	W	T	L	G	F	E	Y	H
Query Conservation
Alig confidence																					.												.	.	.	.	.	.	.	.	.
Template Conservation																					.												.	.	.	.	.	.	.	.	.
Template Sequence		P	E	Y	E	F	I	H	S	N	F	D	D	Y	L	K	A	V	Q	E	.	E	L	P	L	G	T	V	T	G	E	L	.	.	.	.	.	.	.	.	.	A	N	T	S	S	A	R	V	Y	L	K	Q	W	N	T	K	V	Q	R	Q	L	E	N	I	A	E	P	L	A	A	X	A	Y	E	V	T	G	D	Y	P
Template Known Secondary structure		S	S																		.	T											.	.	.	.	.	.	.	.	.		G	G	G	G	B	T																T	T													S
Template Predicted Secondary structure																					.												.	.	.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280										.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.					.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.
Query SS confidence																																																															.	.	.	.
Query Sequence		H	G	L	L	E	K	M	W	K	E	I	L	K	N	H	A	H	D	S	I	G	C	C	C	S	D	K	V	H	R	E	I	V	A	R	F	E	L	A	E	D	M	A	D	N	L	I	R	F	Y	M	R	K	I	A	D	N	M	P	Q	S	.	.	.	.	D	A	D	K	L	V	L	F	N	L	M	P	W	P	R
Query Conservation																																																															.	.	.	.
Alig confidence																																																															.	.	.	.
Template Conservation
Template Sequence		H	D	Q	F	D	Y	A	W	K	T	L	L	Q	N	H	P	H	D	S	I	C	G	C	S	V	D	E	V	H	R	G	X	X	T	R	F	E	N	A	N	D	V	G	H	F	L	A	D	E	A	T	R	Q	L	T	E	A	I	D	T	S	V	F	P	E	K	A	H	P	F	V	L	F	N	T	S	G	Y	Q	K
Template Known Secondary structure														T	T		S	T	T	T	T	T	S		S																																	T	B			T	T	S		T	T										S	S	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.																					410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	E	V	I	N	T	T	V	R	L	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	F	N	L	R	D	D	R	G	Q	P	V	P	Y	F	I	R	H	A	R	E	I	D	P	G	L	I	D	R	Q	I	V	H	Y	G	N	Y	D	P	F	M	E	F	D	I	Q	I
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence		T	E	V	V	T	V	E	V	E	I	E	R	L	P	F	Y	T	G	K	P	E	D	L	Y	H	E	L	K	Q	K	A	T	P	D	Y	Q	V	I	D	P	T	G	K	A	V	A	S	R	I	V	K	E	D	V	R	F	G	Y	D	L	P	Q	P	Y	X	A	K	.	.	.	.	.	.	Y	L	T	V	E	L	S
Template Known Secondary structure																G	G	G	S												S										S	S	S																										.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480							.	.	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.			.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		N	Q	I	V	P	S	M	G	Y	R	T	L	Y	I	E	A	N	Q	P	G	N	V	I	A	A	K	S	.	.	D	A	E	G	I	L	E	N	A	F	W	Q	I	A	L	N	E	D	G	S	L	Q	L	V	D	K	D	S	G	V	R	Y	D	R	V	L	Q	I	E	E	S	S	D	D	G	D	E	Y	D	Y	S
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		V	K	E	X	A	P	F	S	W	D	S	F	A	L	I	Q	G	E	T	K	A	F	E	G	S	L	L	A	Q	P	A	T	N	E	X	E	N	E	F	I	Q	V	K	I	E	N	N	G	S	L	T	I	A	D	K	K	T	G	E	T	F	S	K	L	L	T	F	E	D	T	G	D	I	G	N	E	Y	I	F	F
Template Known Secondary structure							T	T										S							S			S			T	T	T	T					S	S							T	T	S							T	T	T								T									S	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.		.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.																	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	K	E	E	W	V	I	T	A	A	N	A	K	P	Q	C	D	I	I	.	H	E	A	W	Q	S	R	A	V	I	R	Y	D	M	A	V	P	L	N	L	S	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	R	Q	S	T	G	R	V	G	V	V	L	V	V	T	L	S	H	N
Query Conservation																						.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	P	T	E	D	Q	G	I	T	T	E	N	V	T	A	E	I	T	N	K	E	N	S	P	V	K	A	S	Y	Q	I	K	Q	T	V	X	L	P	V	A	A	D	E	R	L	E	E	E	Q	K	A	V	R	E	F	R	E	R	L	A	Q	R	S	T	T	L	R	P	F	E	I	T	T	X	V	T	X	I	K	E
Template Known Secondary structure				T	T						S	T	T												S	S														S	S	B		T								T	T			G	G	G					B		S															T	T
Template Predicted Secondary structure
Template SS confidence
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	R	I	D	V	D	I	N	L	D	N	Q	A	D	D	H	R	L	R	V	L	V	P	T	P	F	N	T	D	S	V	L	A	D	T	Q	F	G	S	L	T	R	P	V	N	D	S	A	M	N	N	W	Q	Q	E	G	W	K	E	A	P	V	P	V	W	N	M	L	N	Y	V	A	L	Q	E	G	R	N	G
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	N	Q	L	F	F	E	T	T	I	N	N	Q	I	K	D	H	R	L	R	V	L	F	P	T	G	X	V	T	E	T	H	E	A	D	S	I	Y	E	V	V	T	R	P	N	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	P	Q	H	Q	Q	A	F	V	N	V	H	D	Q	N	K	G
Template Known Secondary structure																	S										S				S							S	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S							S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.																700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	V	F	S	E	G	L	R	E	F	E	V	I	G	E	E	K	K	T	F	A	I	T	L	L	R	G	V	G	L	L	G	K	E	D	L	L	L	R	P	G	R	P	S	G	I	K	M	P	V	P	D	S	Q	L	R	G	L	L	S	C	R	L	S	L	L	S	Y	T	G	T	P	T	A	A	G	V	A	Q
Query Conservation
Alig confidence																.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	I	F	N	E	G	L	N	E	Y	E	V	L	.	.	A	D	G	T	I	A	V	T	L	I	R	C	V	G	E	L	G	D	W	G	Y	.	.	.	.	.	.	.	.	.	.	.	F	A	T	P	E	A	Q	C	Q	G	E	Y	T	F	K	Y	G	L	S	L	H	G	K	P	E	E	R	F	A	T	Y	Q
Template Known Secondary structure							S	S								.	.	T	T												S	B			T	T	S		.	.	.	.	.	.	.	.	.	.	.		B		G	G	G	G															S	S	G	G	G
Template Predicted Secondary structure																.	.																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		725	.	.	.	.	730	.	.	.	.	.	.	.	.			.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.												760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	R	A	W	L	T	P	V	Q	C	Y	N	K	I	P	W	D	V	M	K	L	N	K	A	G	F	N	V	P	E	S	Y	S	L	L	K	M	P	P	V	G	C	L	I	S	A	L	K	K	A	E	D	R	Q	E	V	I	L	R	L	F	N	P	A	E	S	A	T	C	D	A	T	V	A	F	S	R	E	V
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.																																										.
Template Conservation																		.	.	.	.	.	.	.	.																																										.
Template Sequence		Q	A	Y	S	A	Q	I	P	F	T	A	A	T	T	A	R	.	.	.	.	.	.	.	.	H	E	G	K	L	A	P	N	H	V	Y	L	T	T	A	E	G	P	I	G	W	T	A	V	K	R	Q	E	Q	T	N	H	L	V	V	R	G	F	N	L	T	.	A	Q	N	I	P	C	E	L	H	K	E	T	Q	P
Template Known Secondary structure							T	S									S	.	.	.	.	.	.	.	.				S	B		S				S						S	S										T	T	T											S	.	S	S		B							T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.																																										.
Template SS confidence
		792	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.									.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.		.	850	.	.	.	.	.	.	.	.	.	860	.	.
		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	C	S	E	T	M	M	D	E	H	I	T	T	E	E	N	Q	G	S	N	L	S	G	P	F	L	P	G	Q	S	R	T	F	S	Y	R
Query Conservation
Alig confidence					.												.	.	.
Template Conservation					.												.	.	.
Template Sequence		A	T	C	.	L	T	N	V	L	E	E	P	L	T	P	.	.	.	A	I	E	V	D	A	P	L	R	P	F	E	I	R	T	W	R	F	E
Template Known Secondary structure					.				T	T	S		B		S	S	.	.	.				T	T	S		B		T	T
Template Predicted Secondary structure					.												.	.	.
Template SS confidence
		863	.	.		.	.	.	.	870	.	.	.	.	.	.				.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.